Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

26383937 .. 26385015

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGATGCAAGTCTACGGAAACCAGAGAGGTCCTTATGGACCAATCAAGAATTCTATGGGTTTTGTCAAGAATCAAGGTCCATGTAAGCCATGCTATATGCCTTTTCCGGCTAATCACCGGAACCAGGTGCCGCCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATCTCCACAAACCCTGGTGCCACCTTATTCATGTGGTGGGTACAATTTTCAAGGGCAGGGTGGTTCTACTTCAGCAAGTTCTGTCCCTCATCGTCTACCACCGCAAGGCGTATCTCCAGTTAACAGTGCTAGTCCAGTAGTCTCTGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTTAATGAAAAATCAAAGCAGAGGAGGACTGGAGAGTACTAGTTCACTGAATTATGTACCTCTTGTACCACAGCGAGGAGCATTTCCTGTTCAAAATGTTGCTACTGATGTTCCAGTAGTAGTTCCTGGTTTAATTGATTCTCTCCTAGCACAAGGTGTCATTTCGTTGAAGAAACAAAGCCAGGCACTGAAAGAGGAGAAGGATGCTATGGTAGGATGTGAGTTTTTTGGCATTGATCTAAATCTGCGTCGCGAATCTGTGGTAGTCGGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAGAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACCTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGTAGAGGCTGAGACTAAGGCATTACCTTCTGGTGTAGTTTTGTGCGTTGCTGACACCAATGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGTGGACGAGGATCAGAGGTCCAGCGCCGGAGATGGATCGGTCACAGTTGGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

326

Amino Acids

35.27

Weight (kDa)

9.14

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	127, 202
AccI	GTMKAC	2 cut(s)	12, 280
AccII	CGCG	1 cut(s)	618
AciI	CCGC	4 cut(s)	131, 287, 754, 881
AclWI	GGATC	2 cut(s)	942, 967
AcsI	RAATTY	2 cut(s)	49, 175
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	2 cut(s)	359, 521
AfaI	GTAC	4 cut(s)	227, 403, 423, 432
AfiI	CCNNNNNNNGG	4 cut(s)	124, 137, 290, 440
AgsI	TTSAA	4 cut(s)	236, 458, 535, 688
AhlI	ACTAGT	2 cut(s)	404, 899
AjnI	CCWGG	4 cut(s)	123, 198, 490, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	1 cut(s)	672
AluI	AGCT	1 cut(s)	672
Alw26I	GTCTC	3 cut(s)	331, 348, 818
AlwI	GGATC	2 cut(s)	942, 967
AlwNI	CAGNNNCTG	1 cut(s)	553
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	2 cut(s)	49, 175
AspLEI	GCGC	1 cut(s)	950
AspS9I	GGNCC	5 cut(s)	29, 38, 77, 942, 975
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	5 cut(s)	29, 38, 77, 942, 975
BanI	GGYRCC	2 cut(s)	127, 202
BbsI	GAAGAC	1 cut(s)	902
BbvI	GCAGC	1 cut(s)	720
BccI	CCATC	2 cut(s)	193, 950
BciT130I	CCWGG	4 cut(s)	125, 200, 492, 548
BcoDI	GTCTC	3 cut(s)	331, 348, 818
BcuI	ACTAGT	2 cut(s)	404, 899
BfaI	CTAG	5 cut(s)	315, 405, 512, 900, 979
BfoI	RGCGCY	1 cut(s)	951
BisI	GCNGC	2 cut(s)	131, 709
BlsI	GCNGC	2 cut(s)	132, 710
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	4 cut(s)	125, 200, 492, 548
Bme18I	GGWCC	5 cut(s)	29, 38, 77, 942, 975
BmgT120I	GGNCC	5 cut(s)	29, 38, 77, 942, 975
BmiI	GGNNCC	4 cut(s)	122, 129, 204, 976
BmrFI	CCNGG	4 cut(s)	125, 200, 492, 548
BmsI	GCATC	1 cut(s)	559
BpiI	GAAGAC	1 cut(s)	902
BpmI	CTGGAG	2 cut(s)	285, 416
BsaBI	GATNNNNATC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	198, 656
BsaWI	WCCGGW	3 cut(s)	117, 681, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 137, 290, 440
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	4 cut(s)	302, 320, 399, 479
Bse3DI	GCAATG	1 cut(s)	668
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	4 cut(s)	125, 200, 492, 548
BseDI	CCNNGG	2 cut(s)	198, 656
BseGI	GGATG	3 cut(s)	574, 587, 747
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	4 cut(s)	124, 137, 290, 440
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	1 cut(s)	813
BseNI	ACTGG	4 cut(s)	302, 320, 399, 479
BseRI	GAGGAG	3 cut(s)	402, 456, 575
BseXI	GCAGC	1 cut(s)	720
Bsh1236I	CGCG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	678
BshNI	GGYRCC	2 cut(s)	127, 202
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	6 cut(s)	107, 118, 134, 682, 739, 951
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	4 cut(s)	124, 137, 290, 440
BsmAI	GTCTC	3 cut(s)	331, 348, 818
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	678
Bso31I	GGTCTC	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	363, 601, 934, 959
Bsp68I	TCGCGA	1 cut(s)	618
BspACI	CCGC	4 cut(s)	131, 287, 754, 881
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	4 cut(s)	122, 129, 204, 976
BspPI	GGATC	2 cut(s)	942, 967
BspT107I	GGYRCC	2 cut(s)	127, 202
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	4 cut(s)	302, 320, 399, 479
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	198, 656
BssMI	GATC	4 cut(s)	363, 601, 934, 959
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	4 cut(s)	125, 200, 492, 548
Bst4CI	ACNGT	2 cut(s)	311, 970
BstC8I	GCNNGC	1 cut(s)	758
BstDEI	CTNAG	2 cut(s)	822, 828
BstF5I	GGATG	3 cut(s)	574, 587, 747
BstFNI	CGCG	1 cut(s)	618
BstH2I	RGCGCY	1 cut(s)	951
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	4 cut(s)	366, 604, 937, 962
BstMAI	GTCTC	3 cut(s)	331, 348, 818
BstMBI	GATC	4 cut(s)	363, 601, 934, 959
BstMCI	CGRYCG	1 cut(s)	138
BstNI	CCWGG	4 cut(s)	125, 200, 492, 548
BstNSI	RCATGY	2 cut(s)	728, 799
BstSCI	CCNGG	4 cut(s)	123, 198, 490, 546
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	720
BstV2I	GAAGAC	1 cut(s)	902
BstXI	CCANNNNNNTGG	1 cut(s)	877
BsuRI	GGCC	1 cut(s)	678
BtsCI	GGATG	3 cut(s)	574, 587, 747
BtsIMutI	CAGTG	3 cut(s)	316, 410, 551
BtuMI	TCGCGA	1 cut(s)	618
Cac8I	GCNNGC	1 cut(s)	758
CaiI	CAGNNNCTG	1 cut(s)	553
CfoI	GCGC	1 cut(s)	950
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	5 cut(s)	29, 38, 77, 942, 975
CseI	GACGC	1 cut(s)	602
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	4 cut(s)	226, 402, 422, 431
CviAII	CATG	5 cut(s)	81, 90, 216, 725, 796
CviQI	GTAC	4 cut(s)	226, 402, 422, 431
DdeI	CTNAG	2 cut(s)	822, 828
DpnI	GATC	4 cut(s)	365, 603, 936, 961
DpnII	GATC	4 cut(s)	363, 601, 934, 959
DraIII	CACNNNGTG	2 cut(s)	359, 521
EciI	GGCGGA	1 cut(s)	896
Eco130I	CCWWGG	1 cut(s)	656
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	5 cut(s)	29, 38, 77, 942, 975
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	2 cut(s)	29, 975
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	4 cut(s)	123, 198, 490, 546
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
FaeI	CATG	5 cut(s)	84, 93, 219, 728, 799
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	5 cut(s)	80, 89, 215, 724, 795
FauI	CCCGC	1 cut(s)	761
FauNDI	CATATG	1 cut(s)	714
FblI	GTMKAC	2 cut(s)	12, 280
Fnu4HI	GCNGC	2 cut(s)	131, 709
FokI	GGATG	3 cut(s)	581, 594, 754
Fsp4HI	GCNGC	2 cut(s)	131, 709
FspBI	CTAG	5 cut(s)	315, 405, 512, 900, 979
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	2 cut(s)	131, 709
GsuI	CTGGAG	2 cut(s)	285, 416
HaeII	RGCGCY	1 cut(s)	951
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	6 cut(s)	107, 118, 134, 682, 739, 951
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	5 cut(s)	84, 93, 219, 728, 799
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	70, 503, 620
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	6 cut(s)	107, 118, 134, 682, 739, 951
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	5 cut(s)	13, 281, 307, 410, 928
Hpy188I	TCNGA	1 cut(s)	939
Hpy188III	TCNNGA	4 cut(s)	46, 67, 617, 730
Hpy8I	GTNNAC	5 cut(s)	13, 281, 307, 410, 928
Hpy99I	CGWCG	1 cut(s)	618
HpyAV	CCTTC	2 cut(s)	559, 849
HpyCH4III	ACNGT	2 cut(s)	311, 970
HpyCH4V	TGCA	2 cut(s)	7, 785
HpyF3I	CTNAG	2 cut(s)	822, 828
Hsp92II	CATG	5 cut(s)	84, 93, 219, 728, 799
HspAI	GCGC	1 cut(s)	948
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	363, 601, 934, 959
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	1 cut(s)	559
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	5 cut(s)	315, 405, 512, 900, 979
MaeIII	GTNAC	3 cut(s)	773, 805, 964
MalI	GATC	4 cut(s)	365, 603, 936, 961
MboI	GATC	4 cut(s)	363, 601, 934, 959
MboII	GAAGA	6 cut(s)	152, 547, 707, 745, 907, 920
MluCI	AATT	6 cut(s)	49, 155, 175, 229, 415, 498
MseI	TTAA	3 cut(s)	306, 368, 497
MspI	CCGG	6 cut(s)	107, 118, 134, 682, 739, 951
MspR9I	CCNGG	4 cut(s)	125, 200, 492, 548
MvaI	CCWGG	4 cut(s)	125, 200, 492, 548
MvnI	CGCG	1 cut(s)	618
NdeI	CATATG	1 cut(s)	714
NdeII	GATC	4 cut(s)	363, 601, 934, 959
NlaIII	CATG	5 cut(s)	84, 93, 219, 728, 799
NlaIV	GGNNCC	4 cut(s)	122, 129, 204, 976
NmuCI	GTSAC	1 cut(s)	964
NruI	TCGCGA	1 cut(s)	618
NspI	RCATGY	2 cut(s)	728, 799
PfeI	GAWTC	3 cut(s)	70, 503, 620
PkrI	GCNGC	2 cut(s)	132, 710
PpuMI	RGGWCCY	2 cut(s)	29, 975
Psp5II	RGGWCCY	2 cut(s)	29, 975
Psp6I	CCWGG	4 cut(s)	123, 198, 490, 546
PspGI	CCWGG	4 cut(s)	123, 198, 490, 546
PspN4I	GGNNCC	4 cut(s)	122, 129, 204, 976
PspPI	GGNCC	5 cut(s)	29, 38, 77, 942, 975
PspPPI	RGGWCCY	2 cut(s)	29, 975
PstNI	CAGNNNCTG	1 cut(s)	553
RruI	TCGCGA	1 cut(s)	618
RsaI	GTAC	4 cut(s)	227, 403, 423, 432
RsaNI	GTAC	4 cut(s)	226, 402, 422, 431
SaqAI	TTAA	3 cut(s)	306, 368, 497
SatI	GCNGC	2 cut(s)	131, 709
Sau3AI	GATC	4 cut(s)	363, 601, 934, 959
Sau96I	GGNCC	5 cut(s)	29, 38, 77, 942, 975
ScaI	AGTACT	1 cut(s)	403
ScrFI	CCNGG	4 cut(s)	125, 200, 492, 548
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	5 cut(s)	29, 38, 77, 942, 975
SpeI	ACTAGT	2 cut(s)	404, 899
Sse9I	AATT	6 cut(s)	49, 155, 175, 229, 415, 498
SsiI	CCGC	4 cut(s)	131, 287, 754, 881
SspMI	CTAG	5 cut(s)	315, 405, 512, 900, 979
StyD4I	CCNGG	4 cut(s)	123, 198, 490, 546
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	2 cut(s)	311, 970
TaqI	TCGA	1 cut(s)	169
TaqII	GACCGA	2 cut(s)	128, 952
TasI	AATT	6 cut(s)	49, 155, 175, 229, 415, 498
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	3 cut(s)	70, 503, 620
Tru1I	TTAA	3 cut(s)	306, 368, 497
Tru9I	TTAA	3 cut(s)	306, 368, 497
TscAI	CASTG	3 cut(s)	316, 417, 558
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	3 cut(s)	204, 386, 921
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	3 cut(s)	316, 417, 558
VpaK11BI	GGWCC	5 cut(s)	29, 38, 77, 942, 975
XapI	RAATTY	2 cut(s)	49, 175
XceI	RCATGY	2 cut(s)	728, 799
XmiI	GTMKAC	2 cut(s)	12, 280
XspI	CTAG	5 cut(s)	315, 405, 512, 900, 979
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.