Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

26129227 .. 26129814

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG248200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATGCAAGTCTACAGAAACCAGAGAGGTCCTTATGGACCAATCAAGAATTCTATGGGTTCTGTCAAGAATCAAGGTCCATGTAAACCACGCTATATGCCTTTTCCGGCTAATCACCGGAACCAGGTGCCACCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATCTCCACAAACCCTGGTGCCACCTTATTCATGTGGTGGGTACAATTTTCAAGGGCAGGGTGGTTCTACTTCAGCAAGTTCTGTCCCTCATCATCTACCACCGCAAGGCGTATCTCCGGTTAACAGTGCTGGTCTAGTAGCCTCTACTTTGCTTGGGTCTTTAATGGCACAAGCTGTAATCTCATTGAAAAATCAAAGCAGAGGAGGATTGGAGGGTACTAGTTCACTAAATTCTCTACCTCTTGTACCACAGCGAGATGCATTTCCTGTTCAAAATGCTACTGCTGATGTTCCAGTAGTAGTTCCTGGTTTAATTGATTCTCTCCTGGCACAAGGTGTCATTTCGTTGAAGAAACAAAGCCCGACACTGAAAGAGGAGAAGGATGCTGTGGTAGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

195

Amino Acids

20.66

Weight (kDa)

9.67

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	127, 202
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	287
AcsI	RAATTY	3 cut(s)	49, 175, 415
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	521
AfaI	GTAC	3 cut(s)	227, 403, 432
AfiI	CCNNNNNNNGG	3 cut(s)	124, 137, 290
AgeI	ACCGGT	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	236, 373, 458, 535
AhlI	ACTAGT	1 cut(s)	404
AjnI	CCWGG	4 cut(s)	123, 198, 490, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
ApoI	RAATTY	3 cut(s)	49, 175, 415
AsiGI	ACCGGT	1 cut(s)	133
AspS9I	GGNCC	3 cut(s)	29, 38, 77
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	3 cut(s)	29, 38, 77
BanI	GGYRCC	2 cut(s)	127, 202
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	4 cut(s)	125, 200, 492, 512
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	2 cut(s)	320, 405
BfmI	CTRYAG	1 cut(s)	13
Bme1390I	CCNGG	4 cut(s)	125, 200, 492, 512
Bme18I	GGWCC	3 cut(s)	29, 38, 77
BmgT120I	GGNCC	3 cut(s)	29, 38, 77
BmiI	GGNNCC	3 cut(s)	122, 129, 204
BmrFI	CCNGG	4 cut(s)	125, 200, 492, 512
BmsI	GCATC	2 cut(s)	433, 559
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	3 cut(s)	117, 133, 301
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 137, 290
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	479
BseBI	CCWGG	4 cut(s)	125, 200, 492, 512
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	574, 587
BseLI	CCNNNNNNNGG	3 cut(s)	124, 137, 290
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	2 cut(s)	402, 575
Bsh1285I	CGRYCG	1 cut(s)	138
BshNI	GGYRCC	2 cut(s)	127, 202
BshTI	ACCGGT	1 cut(s)	133
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	4 cut(s)	107, 118, 134, 302
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	124, 137, 290
BsmFI	GGGAC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	287
BspLI	GGNNCC	3 cut(s)	122, 129, 204
BspT107I	GGYRCC	2 cut(s)	127, 202
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	198
Bst2UI	CCWGG	4 cut(s)	125, 200, 492, 512
Bst4CI	ACNGT	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	574, 587
BstMCI	CGRYCG	1 cut(s)	138
BstNI	CCWGG	4 cut(s)	125, 200, 492, 512
BstSCI	CCNGG	4 cut(s)	123, 198, 490, 510
BstSFI	CTRYAG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	574, 587
BtsIMutI	CAGTG	2 cut(s)	316, 551
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	29, 38, 77
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	226, 402, 431
CspAI	ACCGGT	1 cut(s)	133
CviAII	CATG	2 cut(s)	81, 216
CviJI	RGCY	5 cut(s)	110, 151, 326, 359, 546
CviKI_1	RGCY	5 cut(s)	110, 151, 326, 359, 546
CviQI	GTAC	3 cut(s)	226, 402, 431
DraIII	CACNNNGTG	1 cut(s)	521
Eco47I	GGWCC	3 cut(s)	29, 38, 77
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	4 cut(s)	123, 198, 490, 510
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	2 cut(s)	84, 219
FaiI	YATR	6 cut(s)	36, 56, 82, 96, 98, 217
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	80, 215
FblI	GTMKAC	1 cut(s)	12
FokI	GGATG	1 cut(s)	581
FspBI	CTAG	2 cut(s)	320, 405
HapII	CCGG	4 cut(s)	107, 118, 134, 302
Hin1II	CATG	2 cut(s)	84, 219
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	70, 503
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	4 cut(s)	107, 118, 134, 302
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	4 cut(s)	13, 86, 307, 410
Hpy188III	TCNNGA	2 cut(s)	46, 67
Hpy8I	GTNNAC	4 cut(s)	13, 86, 307, 410
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	7, 446
Hsp92II	CATG	2 cut(s)	84, 219
KspAI	GTTAAC	1 cut(s)	307
LweI	GCATC	2 cut(s)	433, 559
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	2 cut(s)	320, 405
MboII	GAAGA	2 cut(s)	152, 547
MluCI	AATT	6 cut(s)	49, 155, 175, 229, 415, 498
MnlI	CCTC	9 cut(s)	20, 177, 282, 337, 380, 383, 391, 435, 553
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	3 cut(s)	306, 347, 497
MspI	CCGG	4 cut(s)	107, 118, 134, 302
MspR9I	CCNGG	4 cut(s)	125, 200, 492, 512
MvaI	CCWGG	4 cut(s)	125, 200, 492, 512
NlaIII	CATG	2 cut(s)	84, 219
NlaIV	GGNNCC	3 cut(s)	122, 129, 204
NsiI	ATGCAT	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	70, 503
PinAI	ACCGGT	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	4 cut(s)	123, 198, 490, 510
PspGI	CCWGG	4 cut(s)	123, 198, 490, 510
PspN4I	GGNNCC	3 cut(s)	122, 129, 204
PspPI	GGNCC	3 cut(s)	29, 38, 77
PspPPI	RGGWCCY	1 cut(s)	29
RsaI	GTAC	3 cut(s)	227, 403, 432
RsaNI	GTAC	3 cut(s)	226, 402, 431
SaqAI	TTAA	3 cut(s)	306, 347, 497
Sau96I	GGNCC	3 cut(s)	29, 38, 77
ScrFI	CCNGG	4 cut(s)	125, 200, 492, 512
SetI	ASST	8 cut(s)	31, 79, 129, 169, 211, 361, 427, 523
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	433, 559
SfcI	CTRYAG	1 cut(s)	13
SinI	GGWCC	3 cut(s)	29, 38, 77
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	6 cut(s)	49, 155, 175, 229, 415, 498
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	2 cut(s)	320, 405
StyD4I	CCNGG	4 cut(s)	123, 198, 490, 510
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	169
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	6 cut(s)	49, 155, 175, 229, 415, 498
TfiI	GAWTC	2 cut(s)	70, 503
Tru1I	TTAA	3 cut(s)	306, 347, 497
Tru9I	TTAA	3 cut(s)	306, 347, 497
TscAI	CASTG	2 cut(s)	316, 558
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	316, 558
VpaK11BI	GGWCC	3 cut(s)	29, 38, 77
XapI	RAATTY	3 cut(s)	49, 175, 415
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	2 cut(s)	320, 405
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.