Rw0G014640

pcf11p-similar protein 4

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00653
Physical Location & Seq
Reverse (-)
20361 .. 21646
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014640.1

Sequence Viewer

Length: 1134 bp
ATGATGCAAGTCTACGGAAACCAGAGAGGTCCTTATGGACCAATCAAGAATTCTATGGGTTCTGTCAAGAATCAAGGTCCATGTAAGCCACGCTATATGCCTTTTCCGGCTAATCACCGGACCCAGGTGCCACCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATCTCCACAAACCCTGGTGCCACCTTATTCATGTGGTGGGTACAATTTTCAAGAGCAGGGTGGTTCTACTTCAGCAAGTTCTGTCCCTCATCGTCTACCACCGCAAGGCGTATCTCCGGTTAACAGTGCTGGTCCAGTAGCCTCTGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTCATTGAAAAATCAAAGCAGAGGAGGACTGGAGGGTACTAGTTCACTAAATTCTGTACCTCTTGTACCACAGCAAGGGGCATTGCCTGTTCAAAATGCTGCTGTTGATGTTCCAGTAGTACTTCCTGGTTTAATTGATTCACTCCTGGCACAAGGTGTGATTTCGTTGAAGAAACAAAGCCAGGCACTGAAAGAGGAGAAGGATGCTGTTGTAGGATGTGAGTTTTCCAGCCTTGATCTAAATCTGCGTCGCGAATCTGTGGTAATCGGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAGAACAGCACAACAACCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACTTTTATGCAAGTACAAGCATGTGGCTTGTTACAGATGTAGAGGCTGAGGCTGAGGCATTACCTTCTGGTGTAGTTTTGTGCGTTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCACAGATGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTGCTGTTTACTTGAATGCGCCTCAGGGGCCAGCGCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGACTTGA

Protein Analysis

377

Amino Acids

41.15

Weight (kDa)

8.91

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_PCFS4 PF23228 302 - 368 4.2e-28 PCFS4 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 202
AccB7I CCANNNNNTGG 1 cut(s) 1095
AccI GTMKAC 2 cut(s) 12, 280
AccII CGCG 1 cut(s) 618
AciI CCGC 5 cut(s) 287, 754, 881, 926, 1123
AclWI GGATC 2 cut(s) 942, 1065
AcsI RAATTY 3 cut(s) 49, 175, 415
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 2 cut(s) 359, 521
AfaI GTAC 6 cut(s) 227, 403, 423, 432, 486, 790
AfiI CCNNNNNNNGG 5 cut(s) 124, 137, 290, 440, 1095
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 6 cut(s) 236, 373, 458, 535, 688, 1027
AhlI ACTAGT 2 cut(s) 404, 899
AjnI CCWGG 5 cut(s) 123, 198, 490, 510, 546
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AloI GAACNNNNNNTCC 2 cut(s) 728, 760
AluBI AGCT 1 cut(s) 672
AluI AGCT 1 cut(s) 672
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 942, 1065
AlwNI CAGNNNCTG 1 cut(s) 553
AoxI GGCC 2 cut(s) 676, 1040
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 3 cut(s) 49, 175, 415
AsiGI ACCGGT 1 cut(s) 133
AspLEI GCGC 2 cut(s) 1033, 1048
AspS9I GGNCC 7 cut(s) 29, 38, 77, 120, 317, 1040, 1073
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 6 cut(s) 29, 38, 77, 120, 317, 1073
AxyI CCTNAGG 1 cut(s) 1035
BanI GGYRCC 2 cut(s) 127, 202
BbsI GAAGAC 1 cut(s) 902
BbvCI CCTCAGC 2 cut(s) 822, 828
BbvI GCAGC 1 cut(s) 451
BccI CCATC 2 cut(s) 193, 1048
BciT130I CCWGG 5 cut(s) 125, 200, 492, 512, 548
BcoDI GTCTC 1 cut(s) 348
BcuI ACTAGT 2 cut(s) 404, 899
BfaI CTAG 2 cut(s) 405, 900
BfmI CTRYAG 1 cut(s) 1077
BfoI RGCGCY 1 cut(s) 1049
BglI GCCNNNNNGGC 1 cut(s) 1039
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
BmcAI AGTACT 1 cut(s) 486
Bme1390I CCNGG 5 cut(s) 125, 200, 492, 512, 548
Bme18I GGWCC 6 cut(s) 29, 38, 77, 120, 317, 1073
BmgT120I GGNCC 7 cut(s) 29, 38, 77, 120, 317, 1040, 1073
BmiI GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
BmrFI CCNGG 5 cut(s) 125, 200, 492, 512, 548
BmsI GCATC 2 cut(s) 559, 952
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 2 cut(s) 822, 828
BsaBI GATNNNNATC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 123, 198, 656
BsaWI WCCGGW 5 cut(s) 117, 133, 301, 681, 738
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 137, 290, 440, 1095
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 4 cut(s) 320, 399, 479, 870
Bse21I CCTNAGG 1 cut(s) 1035
Bse3DI GCAATG 2 cut(s) 446, 668
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 5 cut(s) 125, 200, 492, 512, 548
BseDI CCNNGG 3 cut(s) 123, 198, 656
BseGI GGATG 4 cut(s) 574, 587, 747, 1008
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 5 cut(s) 124, 137, 290, 440, 1095
BseMI GCAATG 2 cut(s) 446, 668
BseMII CTCAG 3 cut(s) 813, 819, 1049
BseNI ACTGG 4 cut(s) 320, 399, 479, 870
BseRI GAGGAG 2 cut(s) 402, 575
BseXI GCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 618
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 678, 1042
BshNI GGYRCC 2 cut(s) 127, 202
BshTI ACCGGT 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 7 cut(s) 107, 118, 134, 302, 682, 739, 1049
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 5 cut(s) 124, 137, 290, 440, 1095
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 2 cut(s) 678, 1042
Bso31I GGTCTC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 363, 601, 934, 1057
Bsp68I TCGCGA 1 cut(s) 618
BspACI CCGC 5 cut(s) 287, 754, 881, 926, 1123
BspANI GGCC 2 cut(s) 678, 1042
BspCNI CTCAG 3 cut(s) 814, 820, 1048
BspFNI CGCG 1 cut(s) 618
BspHI TCATGA 1 cut(s) 985
BspLI GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
BspPI GGATC 2 cut(s) 942, 1065
BspT107I GGYRCC 2 cut(s) 127, 202
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 446, 668
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 4 cut(s) 320, 399, 479, 870
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 123, 198, 656
BssMI GATC 4 cut(s) 363, 601, 934, 1057
BssT1I CCWWGG 1 cut(s) 656
Bst2UI CCWGG 5 cut(s) 125, 200, 492, 512, 548
Bst4CI ACNGT 2 cut(s) 311, 1068
BstC8I GCNNGC 2 cut(s) 758, 1044
BstDEI CTNAG 3 cut(s) 822, 828, 1035
BstF5I GGATG 4 cut(s) 574, 587, 747, 1008
BstFNI CGCG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 1049
BstHHI GCGC 2 cut(s) 1033, 1048
BstKTI GATC 4 cut(s) 366, 604, 937, 1060
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 4 cut(s) 363, 601, 934, 1057
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 1039
BstNI CCWGG 5 cut(s) 125, 200, 492, 512, 548
BstNSI RCATGY 2 cut(s) 728, 799
BstSCI CCNGG 5 cut(s) 123, 198, 490, 510, 546
BstSFI CTRYAG 1 cut(s) 1077
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 902
BstXI CCANNNNNNTGG 1 cut(s) 877
Bsu36I CCTNAGG 1 cut(s) 1035
BsuRI GGCC 2 cut(s) 678, 1042
BtsCI GGATG 4 cut(s) 574, 587, 747, 1008
BtsIMutI CAGTG 3 cut(s) 316, 551, 877
BtuMI TCGCGA 1 cut(s) 618
Cac8I GCNNGC 2 cut(s) 758, 1044
CaiI CAGNNNCTG 1 cut(s) 553
CciI TCATGA 1 cut(s) 985
CfoI GCGC 2 cut(s) 1033, 1048
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 7 cut(s) 29, 38, 77, 120, 317, 1040, 1073
CseI GACGC 1 cut(s) 602
Csp6I GTAC 6 cut(s) 226, 402, 422, 431, 485, 789
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 6 cut(s) 81, 216, 725, 796, 986, 1085
CviQI GTAC 6 cut(s) 226, 402, 422, 431, 485, 789
DdeI CTNAG 3 cut(s) 822, 828, 1035
DpnI GATC 4 cut(s) 365, 603, 936, 1059
DpnII GATC 4 cut(s) 363, 601, 934, 1057
DraIII CACNNNGTG 2 cut(s) 359, 521
EciI GGCGGA 1 cut(s) 896
Eco130I CCWWGG 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 6 cut(s) 29, 38, 77, 120, 317, 1073
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 1035
EcoO109I RGGNCCY 2 cut(s) 29, 1073
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 5 cut(s) 123, 198, 490, 510, 546
EcoT14I CCWWGG 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
FaqI GGGAC 1 cut(s) 254
FatI CATG 6 cut(s) 80, 215, 724, 795, 985, 1084
FauI CCCGC 1 cut(s) 761
FauNDI CATATG 1 cut(s) 714
FblI GTMKAC 2 cut(s) 12, 280
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 4 cut(s) 581, 594, 754, 1015
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 405, 900
GlaI GCGC 2 cut(s) 1032, 1047
GluI GCNGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 416
HaeII RGCGCY 1 cut(s) 1049
HaeIII GGCC 2 cut(s) 678, 1042
HapII CCGG 7 cut(s) 107, 118, 134, 302, 682, 739, 1049
HgaI GACGC 1 cut(s) 602
HhaI GCGC 2 cut(s) 1033, 1048
Hin1II CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
Hin6I GCGC 2 cut(s) 1031, 1046
HinP1I GCGC 2 cut(s) 1031, 1046
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 70, 503, 620
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 7 cut(s) 107, 118, 134, 302, 682, 739, 1049
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 5 cut(s) 13, 281, 307, 410, 1021
Hpy188I TCNGA 2 cut(s) 939, 1102
Hpy188III TCNNGA 6 cut(s) 46, 67, 236, 617, 730, 986
Hpy8I GTNNAC 5 cut(s) 13, 281, 307, 410, 1021
Hpy99I CGWCG 1 cut(s) 618
HpyAV CCTTC 2 cut(s) 559, 849
HpyCH4III ACNGT 2 cut(s) 311, 1068
HpyCH4IV ACGT 1 cut(s) 1117
HpyCH4V TGCA 3 cut(s) 7, 785, 957
HpyF10VI GCNNNNNNNGC 1 cut(s) 1039
HpyF3I CTNAG 3 cut(s) 822, 828, 1035
HpySE526I ACGT 1 cut(s) 1117
Hsp92II CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
HspAI GCGC 2 cut(s) 1031, 1046
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 4 cut(s) 363, 601, 934, 1057
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 559, 952
MaeI CTAG 2 cut(s) 405, 900
MaeII ACGT 1 cut(s) 1117
MaeIII GTNAC 3 cut(s) 773, 805, 1062
MalI GATC 4 cut(s) 365, 603, 936, 1059
MboI GATC 4 cut(s) 363, 601, 934, 1057
MboII GAAGA 6 cut(s) 152, 547, 707, 745, 907, 920
MluCI AATT 6 cut(s) 49, 155, 175, 229, 415, 498
MmeI TCCRAC 1 cut(s) 1080
MseI TTAA 2 cut(s) 306, 497
MspI CCGG 7 cut(s) 107, 118, 134, 302, 682, 739, 1049
MspR9I CCNGG 5 cut(s) 125, 200, 492, 512, 548
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 5 cut(s) 125, 200, 492, 512, 548
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 1039
NdeI CATATG 1 cut(s) 714
NdeII GATC 4 cut(s) 363, 601, 934, 1057
NlaIII CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
NlaIV GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
NmuCI GTSAC 1 cut(s) 1062
NruI TCGCGA 1 cut(s) 618
NspI RCATGY 2 cut(s) 728, 799
PagI TCATGA 1 cut(s) 985
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 3 cut(s) 70, 503, 620
PflMI CCANNNNNTGG 1 cut(s) 1095
PinAI ACCGGT 1 cut(s) 133
PkrI GCNGC 1 cut(s) 466
PpuMI RGGWCCY 2 cut(s) 29, 1073
Psp5II RGGWCCY 2 cut(s) 29, 1073
Psp6I CCWGG 5 cut(s) 123, 198, 490, 510, 546
PspGI CCWGG 5 cut(s) 123, 198, 490, 510, 546
PspN4I GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
PspPI GGNCC 7 cut(s) 29, 38, 77, 120, 317, 1040, 1073
PspPPI RGGWCCY 2 cut(s) 29, 1073
PstNI CAGNNNCTG 1 cut(s) 553
RruI TCGCGA 1 cut(s) 618
RsaI GTAC 6 cut(s) 227, 403, 423, 432, 486, 790
RsaNI GTAC 6 cut(s) 226, 402, 422, 431, 485, 789
SaqAI TTAA 2 cut(s) 306, 497
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 4 cut(s) 363, 601, 934, 1057
Sau96I GGNCC 7 cut(s) 29, 38, 77, 120, 317, 1040, 1073
ScaI AGTACT 1 cut(s) 486
ScrFI CCNGG 5 cut(s) 125, 200, 492, 512, 548
SfaNI GCATC 2 cut(s) 559, 952
SfcI CTRYAG 1 cut(s) 1077
SinI GGWCC 6 cut(s) 29, 38, 77, 120, 317, 1073
SpeI ACTAGT 2 cut(s) 404, 899
Sse9I AATT 6 cut(s) 49, 155, 175, 229, 415, 498
SsiI CCGC 5 cut(s) 287, 754, 881, 926, 1123
SspMI CTAG 2 cut(s) 405, 900
StyD4I CCNGG 5 cut(s) 123, 198, 490, 510, 546
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 2 cut(s) 311, 1068
TaiI ACGT 1 cut(s) 1120
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 2 cut(s) 128, 1050
TasI AATT 6 cut(s) 49, 155, 175, 229, 415, 498
TatI WGTACW 2 cut(s) 484, 788
TfiI GAWTC 3 cut(s) 70, 503, 620
Tru1I TTAA 2 cut(s) 306, 497
Tru9I TTAA 2 cut(s) 306, 497
TscAI CASTG 3 cut(s) 316, 558, 877
TseFI GTSAC 1 cut(s) 1062
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 1062
TspDTI ATGAA 2 cut(s) 204, 921
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 3 cut(s) 316, 558, 877
Van91I CCANNNNNTGG 1 cut(s) 1095
VpaK11BI GGWCC 6 cut(s) 29, 38, 77, 120, 317, 1073
XapI RAATTY 3 cut(s) 49, 175, 415
XceI RCATGY 2 cut(s) 728, 799
XmiI GTMKAC 2 cut(s) 12, 280
XspI CTAG 2 cut(s) 405, 900
ZrmI AGTACT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.