FvH4_1g20911

pcf11p-similar protein 4

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
13034209 .. 13035316
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20911.t1

Sequence Viewer

Length: 990 bp
ATGATGCAATGTAAGCCACGCTACATGCCTTTTCCGGCTAATCACCGCAACCAGGTGCCGCCGGTCGGTCATTTTCAGCCCCAATTTGTCCCACCTCGACCAGGTTTCTACCCATCTCCACAAACCCCAGTGCCGCCTTATCAATCGGGTGGGTACACTTTTCAAGGTCCCTGTGGTTCTACTTCTGTCCCTCATCGTCTACCACCGCAAGCCGTGACTCCAGTAGTCTCTGGTCTACTCGGGTCTCTAATGGCACAAGGTGTGATCTCATTGAAAAACCAAAGCGGAGGAGGACAGGAGGCTACTAGTTCACTAAACTCATTGCCTGTTCCAAACAGTAGTACTAATGTTCCAATAGTGCTTCCTAGTTTGATTGATTCTCTCCTCGCACAAGGTGTGATCTCGCTGAAGAATCAAATCCCGGTAGTGAAAGAGGAGAAGGATGCTGTGGTGGGATGTGAGTTTTCTGGCCTTGATTTAAATCTGCGTCGCGAATCTGTGCTAAACGCCTTGTATGAGAGTGGTCTGCCAAAGCAATGCAAAAGCTGTGGCCTGCGGTTCAAGTGTCAAGAAGAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGCATGTCCAAGAAGAGCAAGCATAAACGCTCTCGTAACTTTTATGCAACTACAAGCATGTGGCTTGTTAATGATGCAGAGGTTGAGGCTCAGGTATTAGTTTCTGGAGTAGCTTTGCCTGCTGCTGATAAGAAGAGGAAGTGTAGTGATGAAGAAATGGCTGTTCCTGCCGACGAGGATCAGAGTAAATGTGCCTTGTGCACTGATGCTTTTGTTGAGTTTTATAGCCATGACACAGATGAGTGGATGTACAAAGGTGCTGTGTACTTGAATGCGCCTCAGGGACCAGCGCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGCCCGGAGACTAGTCAGAAACGTCTACGGAGGAGTTAA

Protein Analysis

330

Amino Acids

36.15

Weight (kDa)

8.69

Isoelectric Point (pI)

66.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_PCFS4 PF23228 254 - 319 3e-27 PCFS4 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccI GTMKAC 3 cut(s) 199, 235, 976
AccII CGCG 1 cut(s) 492
AciI CCGC 7 cut(s) 46, 59, 134, 206, 285, 556, 613
AclWI GGATC 2 cut(s) 798, 921
AcuI CTGAAG 1 cut(s) 428
AdeI CACNNNGTG 2 cut(s) 260, 395
AfaI GTAC 4 cut(s) 155, 343, 863, 878
AfiI CCNNNNNNNGG 3 cut(s) 52, 65, 101
AgsI TTSAA 4 cut(s) 164, 274, 562, 883
AhlI ACTAGT 2 cut(s) 305, 962
AjnI CCWGG 2 cut(s) 51, 100
AloI GAACNNNNNNTCC 2 cut(s) 602, 634
AluBI AGCT 2 cut(s) 546, 725
AluI AGCT 2 cut(s) 546, 725
Alw21I GWGCWC 2 cut(s) 579, 815
Alw26I GTCTC 3 cut(s) 232, 249, 953
Alw44I GTGCAC 1 cut(s) 811
AlwI GGATC 2 cut(s) 798, 921
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 469, 550
ApaLI GTGCAC 1 cut(s) 811
ApeKI GCWGC 3 cut(s) 582, 734, 951
AspLEI GCGC 2 cut(s) 889, 904
AspS9I GGNCC 3 cut(s) 167, 896, 929
AsuC2I CCSGG 2 cut(s) 422, 956
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 3 cut(s) 167, 896, 929
AxyI CCTNAGG 1 cut(s) 891
BaeGI GKGCMC 1 cut(s) 815
BanI GGYRCC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 579, 815
BbvI GCAGC 3 cut(s) 594, 721, 938
BccI CCATC 2 cut(s) 121, 904
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 53, 102
BcnI CCSGG 2 cut(s) 422, 956
BcoDI GTCTC 3 cut(s) 232, 249, 953
BcuI ACTAGT 2 cut(s) 305, 962
BfaI CTAG 3 cut(s) 306, 366, 963
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 1 cut(s) 905
BisI GCNGC 5 cut(s) 59, 134, 583, 735, 952
BlsI GCNGC 5 cut(s) 60, 135, 584, 736, 953
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 4 cut(s) 53, 102, 422, 956
Bme18I GGWCC 3 cut(s) 167, 896, 929
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 167, 896, 929
BmiI GGNNCC 4 cut(s) 57, 169, 897, 930
BmrFI CCNGG 4 cut(s) 53, 102, 422, 956
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 433, 676, 808
BmuI ACTGGG 1 cut(s) 122
BpmI CTGGAG 2 cut(s) 204, 738
Bpu10I CCTNAGC 1 cut(s) 702
BpuMI CCSGG 2 cut(s) 422, 956
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 249
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 65, 101
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 128, 221
Bse21I CCTNAGG 1 cut(s) 891
Bse3DI GCAATG 3 cut(s) 14, 320, 542
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 2 cut(s) 53, 102
BseGI GGATG 3 cut(s) 448, 461, 864
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 3 cut(s) 52, 65, 101
BseMI GCAATG 3 cut(s) 14, 320, 542
BseMII CTCAG 2 cut(s) 716, 905
BseNI ACTGG 2 cut(s) 128, 221
BseRI GAGGAG 3 cut(s) 303, 374, 449
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 3 cut(s) 594, 721, 938
Bsh1236I CGCG 1 cut(s) 492
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 471, 552
BshNI GGYRCC 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 579, 815
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 5 cut(s) 35, 62, 422, 905, 956
BslFI GGGAC 4 cut(s) 74, 153, 173, 909
BslI CCNNNNNNNGG 3 cut(s) 52, 65, 101
BsmAI GTCTC 3 cut(s) 232, 249, 953
BsmFI GGGAC 4 cut(s) 74, 153, 173, 909
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 2 cut(s) 471, 552
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 2 cut(s) 579, 815
Bsp1407I TGTACA 1 cut(s) 861
Bsp143I GATC 4 cut(s) 264, 399, 790, 913
Bsp68I TCGCGA 1 cut(s) 492
BspACI CCGC 7 cut(s) 46, 59, 134, 206, 285, 556, 613
BspANI GGCC 2 cut(s) 471, 552
BspCNI CTCAG 2 cut(s) 715, 904
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 4 cut(s) 57, 169, 897, 930
BspPI GGATC 2 cut(s) 798, 921
BspQI GCTCTTC 2 cut(s) 567, 620
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 249
BsrDI GCAATG 3 cut(s) 14, 320, 542
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 861
BsrI ACTGG 2 cut(s) 128, 221
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 4 cut(s) 264, 399, 790, 913
Bst2UI CCWGG 2 cut(s) 53, 102
Bst4CI ACNGT 2 cut(s) 338, 924
Bst6I CTCTTC 3 cut(s) 567, 620, 740
BstAUI TGTACA 1 cut(s) 861
BstC8I GCNNGC 4 cut(s) 210, 554, 632, 732
BstDEI CTNAG 2 cut(s) 702, 891
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 448, 461, 864
BstFNI CGCG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 905
BstHHI GCGC 2 cut(s) 889, 904
BstKTI GATC 4 cut(s) 267, 402, 793, 916
BstMAI GTCTC 3 cut(s) 232, 249, 953
BstMBI GATC 4 cut(s) 264, 399, 790, 913
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 13, 731, 779
BstNI CCWGG 2 cut(s) 53, 102
BstNSI RCATGY 4 cut(s) 28, 602, 619, 673
BstSCI CCNGG 4 cut(s) 51, 100, 420, 954
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 815
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 594, 721, 938
Bsu36I CCTNAGG 1 cut(s) 891
BsuRI GGCC 2 cut(s) 471, 552
BtsCI GGATG 3 cut(s) 448, 461, 864
BtsIMutI CAGTG 2 cut(s) 135, 813
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 4 cut(s) 210, 554, 632, 732
CfoI GCGC 2 cut(s) 889, 904
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 167, 896, 929
CseI GACGC 1 cut(s) 476
CsiI ACCWGGT 2 cut(s) 51, 100
Csp6I GTAC 4 cut(s) 154, 342, 862, 877
CspCI CAANNNNNGTGG 2 cut(s) 529, 564
CviAII CATG 6 cut(s) 25, 599, 616, 670, 842, 941
CviQI GTAC 4 cut(s) 154, 342, 862, 877
DdeI CTNAG 2 cut(s) 702, 891
DpnI GATC 4 cut(s) 266, 401, 792, 915
DpnII GATC 4 cut(s) 264, 399, 790, 913
DraI TTTAAA 1 cut(s) 480
DraIII CACNNNGTG 2 cut(s) 260, 395
Eam1104I CTCTTC 3 cut(s) 567, 620, 740
EarI CTCTTC 3 cut(s) 567, 620, 740
Eco31I GGTCTC 1 cut(s) 249
Eco47I GGWCC 3 cut(s) 167, 896, 929
Eco57I CTGAAG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoO109I RGGNCCY 2 cut(s) 167, 929
EcoRII CCWGG 2 cut(s) 51, 100
FaeI CATG 6 cut(s) 28, 602, 619, 673, 845, 944
FaqI GGGAC 4 cut(s) 74, 153, 173, 909
FatI CATG 6 cut(s) 24, 598, 615, 669, 841, 940
FauNDI CATATG 1 cut(s) 588
FblI GTMKAC 3 cut(s) 199, 235, 976
Fnu4HI GCNGC 5 cut(s) 59, 134, 583, 735, 952
FokI GGATG 3 cut(s) 455, 468, 871
Fsp4HI GCNGC 5 cut(s) 59, 134, 583, 735, 952
FspBI CTAG 3 cut(s) 306, 366, 963
GlaI GCGC 2 cut(s) 888, 903
GluI GCNGC 5 cut(s) 59, 134, 583, 735, 952
GsuI CTGGAG 2 cut(s) 204, 738
HaeII RGCGCY 1 cut(s) 905
HaeIII GGCC 2 cut(s) 471, 552
HapII CCGG 5 cut(s) 35, 62, 422, 905, 956
HgaI GACGC 1 cut(s) 476
HhaI GCGC 2 cut(s) 889, 904
Hin1II CATG 6 cut(s) 28, 602, 619, 673, 845, 944
Hin6I GCGC 2 cut(s) 887, 902
HinP1I GCGC 2 cut(s) 887, 902
HinfI GANTC 4 cut(s) 217, 377, 412, 494
HpaII CCGG 5 cut(s) 35, 62, 422, 905, 956
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 7 cut(s) 156, 200, 236, 311, 813, 877, 977
Hpy188I TCNGA 2 cut(s) 795, 969
Hpy188III TCNNGA 4 cut(s) 491, 569, 604, 717
Hpy8I GTNNAC 7 cut(s) 156, 200, 236, 311, 813, 877, 977
Hpy99I CGWCG 2 cut(s) 492, 788
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 2 cut(s) 338, 924
HpyCH4IV ACGT 1 cut(s) 973
HpyCH4V TGCA 5 cut(s) 7, 540, 659, 689, 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 731, 779
HpyF3I CTNAG 2 cut(s) 702, 891
HpySE526I ACGT 1 cut(s) 973
Hsp92II CATG 6 cut(s) 28, 602, 619, 673, 845, 944
HspAI GCGC 2 cut(s) 887, 902
Kzo9I GATC 4 cut(s) 264, 399, 790, 913
LguI GCTCTTC 2 cut(s) 567, 620
Lsp1109I GCAGC 3 cut(s) 594, 721, 938
LweI GCATC 3 cut(s) 433, 676, 808
MabI ACCWGGT 2 cut(s) 51, 100
MaeI CTAG 3 cut(s) 306, 366, 963
MaeII ACGT 1 cut(s) 973
MaeIII GTNAC 3 cut(s) 214, 647, 918
MalI GATC 4 cut(s) 266, 401, 792, 915
MboI GATC 4 cut(s) 264, 399, 790, 913
MboII GAAGA 6 cut(s) 421, 584, 619, 637, 757, 776
MhlI GDGCHC 2 cut(s) 579, 815
MluCI AATT 1 cut(s) 83
MlyI GAGTC 1 cut(s) 211
MseI TTAA 3 cut(s) 479, 681, 988
MspI CCGG 5 cut(s) 35, 62, 422, 905, 956
MspR9I CCNGG 4 cut(s) 53, 102, 422, 956
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 2 cut(s) 53, 102
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 3 cut(s) 13, 731, 779
NciI CCSGG 2 cut(s) 422, 956
NdeI CATATG 1 cut(s) 588
NdeII GATC 4 cut(s) 264, 399, 790, 913
NlaIII CATG 6 cut(s) 28, 602, 619, 673, 845, 944
NlaIV GGNNCC 4 cut(s) 57, 169, 897, 930
NmuCI GTSAC 2 cut(s) 214, 918
NruI TCGCGA 1 cut(s) 492
NspI RCATGY 4 cut(s) 28, 602, 619, 673
PciSI GCTCTTC 2 cut(s) 567, 620
PctI GAATGC 1 cut(s) 889
PfeI GAWTC 3 cut(s) 377, 412, 494
PkrI GCNGC 5 cut(s) 60, 135, 584, 736, 953
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PpuMI RGGWCCY 2 cut(s) 167, 929
Psp5II RGGWCCY 2 cut(s) 167, 929
Psp6I CCWGG 2 cut(s) 51, 100
PspGI CCWGG 2 cut(s) 51, 100
PspN4I GGNNCC 4 cut(s) 57, 169, 897, 930
PspPI GGNCC 3 cut(s) 167, 896, 929
PspPPI RGGWCCY 2 cut(s) 167, 929
RruI TCGCGA 1 cut(s) 492
RsaI GTAC 4 cut(s) 155, 343, 863, 878
RsaNI GTAC 4 cut(s) 154, 342, 862, 877
SapI GCTCTTC 2 cut(s) 567, 620
SaqAI TTAA 3 cut(s) 479, 681, 988
SatI GCNGC 5 cut(s) 59, 134, 583, 735, 952
Sau3AI GATC 4 cut(s) 264, 399, 790, 913
Sau96I GGNCC 3 cut(s) 167, 896, 929
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 4 cut(s) 53, 102, 422, 956
SduI GDGCHC 2 cut(s) 579, 815
SexAI ACCWGGT 2 cut(s) 51, 100
SfaNI GCATC 3 cut(s) 433, 676, 808
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 3 cut(s) 167, 896, 929
SmiI ATTTAAAT 1 cut(s) 480
SpeI ACTAGT 2 cut(s) 305, 962
Sse9I AATT 1 cut(s) 83
SsiI CCGC 7 cut(s) 46, 59, 134, 206, 285, 556, 613
SspMI CTAG 3 cut(s) 306, 366, 963
StyD4I CCNGG 4 cut(s) 51, 100, 420, 954
SwaI ATTTAAAT 1 cut(s) 480
TaaI ACNGT 2 cut(s) 338, 924
TaiI ACGT 1 cut(s) 976
TaqI TCGA 1 cut(s) 97
TaqII GACCGA 2 cut(s) 56, 906
TasI AATT 1 cut(s) 83
TatI WGTACW 3 cut(s) 341, 861, 876
TauI GCSGC 2 cut(s) 61, 136
TfiI GAWTC 3 cut(s) 377, 412, 494
Tru1I TTAA 3 cut(s) 479, 681, 988
Tru9I TTAA 3 cut(s) 479, 681, 988
TscAI CASTG 2 cut(s) 135, 820
TseFI GTSAC 2 cut(s) 214, 918
TseI GCWGC 3 cut(s) 582, 734, 951
Tsp45I GTSAC 2 cut(s) 214, 918
TspDTI ATGAA 1 cut(s) 777
TspRI CASTG 2 cut(s) 135, 820
VneI GTGCAC 1 cut(s) 811
VpaK11BI GGWCC 3 cut(s) 167, 896, 929
XagI CCTNNNNNAGG 1 cut(s) 99
XceI RCATGY 4 cut(s) 28, 602, 619, 673
XmiI GTMKAC 3 cut(s) 199, 235, 976
XspI CTAG 3 cut(s) 306, 366, 963
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.