Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

1366365 .. 1366673

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG014200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAGTGGTTTGTACCTACAAGCATGTGGCTCAGTGGTGCAGAGGCTTTGGGAACTGATGCAATTCCTGGCTTTTTGCCTGCTGACACCATTGCGGAAAAGAAGAGTGATGAAGAATTGGCTGCTGATGAGGATCAGAATTCATGCGCGTTATGTGGAGAGCCTTTTGATGATTTTTATGGTGATGAGACAGAGGAGTGGATGTATAAAGATGCTGTGTACTTGAATGCACCTCATGGGTCAACACCAGACATGGATAGGTCACAAACTCACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

4.42

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	45 - 98	1.2e-20	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	2 cut(s)	45, 251
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	79, 232
BsaBI	GATNNNNATC	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	179
BspPI	GGATC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	120
BssMI	GATC	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	111
CfoI	GCGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	44, 250
CviAII	CATG	4 cut(s)	55, 174, 266, 283
CviJI	RGCY	6 cut(s)	25, 61, 77, 102, 152, 193
CviKI_1	RGCY	6 cut(s)	25, 61, 77, 102, 152, 193
CviQI	GTAC	2 cut(s)	44, 250
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	4 cut(s)	58, 177, 269, 286
FaiI	YATR	7 cut(s)	56, 175, 184, 210, 237, 267, 284
FatI	CATG	4 cut(s)	54, 173, 265, 282
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	153
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	58, 177, 269, 286
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	250, 273
Hpy188I	TCNGA	1 cut(s)	168
Hpy8I	GTNNAC	2 cut(s)	250, 273
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	71, 92, 260
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	58, 177, 269, 286
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	84, 111, 123, 291
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	79, 232
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	145, 155
MluCI	AATT	4 cut(s)	93, 146, 169, 304
MnlI	CCTC	5 cut(s)	37, 67, 154, 217, 273
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	179
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	58, 177, 269, 286
NmuCI	GTSAC	1 cut(s)	291
NspI	RCATGY	1 cut(s)	58
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
RsaI	GTAC	2 cut(s)	45, 251
RsaNI	GTAC	2 cut(s)	44, 250
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	3 cut(s)	49, 265, 293
SfaNI	GCATC	2 cut(s)	79, 232
Sse9I	AATT	4 cut(s)	93, 146, 169, 304
SsiI	CCGC	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	14
TasI	AATT	4 cut(s)	93, 146, 169, 304
TatI	WGTACW	1 cut(s)	249
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	2 cut(s)	156, 162
TspRI	CASTG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.