Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

131089 .. 131845

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000431.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgatgcaagtctacggaaaccagagaggtccttatggatcaatcaagaattttatgggttctgtcaagaatcaaggtccatgtaagccacgctatatgccttttccggctaatcaccggaaccaggtgccgccggtcggtcattttcagccccaatttcttccacctcgaccaaatttctacccatctccacaaaccctggtgccaccttattcatgtggtgggtacaattttcaaggttctggtccagtagtctctggtttgcttgggtctctaatggcacaaggtgtgatctcattgaaaaatcaaagcagaggaggactggagggggcattgcctgttcaaaatgctgctgctgatggtcctgtagtagttcctggtttgattgattctctcctggcacaagaggtcattttgttgaagaaacaaagcccggcactgaaggaggagaaggatgctatggtaggatgtgcgtttttcggcattgatctaaatctgcgtcgcaaatctgtggtaatcggcttgtatgagggtggcctgccaaggcaatgtaaaagctgtggcctccggttcaagtgtgaagaacagcataaaagccatatggattggctgcttgcttctgtttctcattgtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

212

Amino Acids

23.02

Weight (kDa)

9.32

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	127, 202
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	49, 175
AcuI	CTGAAG	1 cut(s)	461
AdeI	CACNNNGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	124, 137
AgsI	TTSAA	5 cut(s)	236, 301, 344, 421, 574
AjnI	CCWGG	4 cut(s)	123, 198, 376, 396
AluBI	AGCT	1 cut(s)	558
AluI	AGCT	1 cut(s)	558
Alw26I	GTCTC	2 cut(s)	259, 276
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	2 cut(s)	535, 562
ApeKI	GCWGC	3 cut(s)	350, 353, 610
ApoI	RAATTY	2 cut(s)	49, 175
AspS9I	GGNCC	4 cut(s)	29, 77, 245, 362
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	4 cut(s)	29, 77, 245, 362
BanI	GGYRCC	2 cut(s)	127, 202
BbvI	GCAGC	3 cut(s)	337, 340, 597
BccI	CCATC	2 cut(s)	193, 353
BciT130I	CCWGG	4 cut(s)	125, 200, 378, 398
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	259, 276
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	4 cut(s)	131, 351, 354, 611
BlsI	GCNGC	4 cut(s)	132, 352, 355, 612
Bme1390I	CCNGG	5 cut(s)	125, 200, 378, 398, 434
Bme18I	GGWCC	4 cut(s)	29, 77, 245, 362
BmgT120I	GGNCC	4 cut(s)	29, 77, 245, 362
BmiI	GGNNCC	3 cut(s)	122, 129, 204
BmrFI	CCNGG	5 cut(s)	125, 200, 378, 398, 434
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	198, 542
BsaWI	WCCGGW	2 cut(s)	117, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 137
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	248, 327
Bse3DI	GCAATG	2 cut(s)	332, 554
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	4 cut(s)	125, 200, 378, 398
BseDI	CCNNGG	2 cut(s)	198, 542
BseGI	GGATG	2 cut(s)	460, 473
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	124, 137
BseMI	GCAATG	2 cut(s)	332, 554
BseNI	ACTGG	2 cut(s)	248, 327
BseRI	GAGGAG	2 cut(s)	330, 461
BseXI	GCAGC	3 cut(s)	337, 340, 597
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	537, 564
BshNI	GGYRCC	2 cut(s)	127, 202
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	5 cut(s)	107, 118, 134, 434, 568
BslI	CCNNNNNNNGG	2 cut(s)	124, 137
BsmAI	GTCTC	2 cut(s)	259, 276
BsnI	GGCC	2 cut(s)	537, 564
Bso31I	GGTCTC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	38, 291, 487
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	537, 564
BspLI	GGNNCC	3 cut(s)	122, 129, 204
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	2 cut(s)	127, 202
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	2 cut(s)	332, 554
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	248, 327
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	198, 542
BssMI	GATC	3 cut(s)	38, 291, 487
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	4 cut(s)	125, 200, 378, 398
BstC8I	GCNNGC	2 cut(s)	539, 615
BstF5I	GGATG	2 cut(s)	460, 473
BstKTI	GATC	3 cut(s)	41, 294, 490
BstMAI	GTCTC	2 cut(s)	259, 276
BstMBI	GATC	3 cut(s)	38, 291, 487
BstMCI	CGRYCG	1 cut(s)	138
BstNI	CCWGG	4 cut(s)	125, 200, 378, 398
BstSCI	CCNGG	5 cut(s)	123, 198, 376, 396, 432
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	337, 340, 597
BsuRI	GGCC	2 cut(s)	537, 564
BtsCI	GGATG	2 cut(s)	460, 473
BtsIMutI	CAGTG	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	539, 615
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	4 cut(s)	29, 77, 245, 362
CseI	GACGC	1 cut(s)	488
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	81, 216
CviQI	GTAC	1 cut(s)	226
DpnI	GATC	3 cut(s)	40, 293, 489
DpnII	GATC	3 cut(s)	38, 291, 487
DraIII	CACNNNGTG	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	4 cut(s)	29, 77, 245, 362
Eco57I	CTGAAG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	4 cut(s)	123, 198, 376, 396
EcoT14I	CCWWGG	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	2 cut(s)	84, 219
FatI	CATG	2 cut(s)	80, 215
FauNDI	CATATG	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	131, 351, 354, 611
FokI	GGATG	2 cut(s)	467, 480
Fsp4HI	GCNGC	4 cut(s)	131, 351, 354, 611
GluI	GCNGC	4 cut(s)	131, 351, 354, 611
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	537, 564
HapII	CCGG	5 cut(s)	107, 118, 134, 434, 568
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	84, 219
HinfI	GANTC	2 cut(s)	70, 389
HpaII	CCGG	5 cut(s)	107, 118, 134, 434, 568
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	46, 67
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	2 cut(s)	436, 445
HpyCH4V	TGCA	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	84, 219
Kzo9I	GATC	3 cut(s)	38, 291, 487
Lsp1109I	GCAGC	3 cut(s)	337, 340, 597
LweI	GCATC	1 cut(s)	445
MabI	ACCWGGT	1 cut(s)	123
MalI	GATC	3 cut(s)	40, 293, 489
MboI	GATC	3 cut(s)	38, 291, 487
MboII	GAAGA	3 cut(s)	152, 433, 593
MluCI	AATT	5 cut(s)	49, 155, 175, 229, 634
MnlI	CCTC	9 cut(s)	20, 177, 308, 311, 319, 400, 439, 523, 575
MspI	CCGG	5 cut(s)	107, 118, 134, 434, 568
MspR9I	CCNGG	5 cut(s)	125, 200, 378, 398, 434
MvaI	CCWGG	4 cut(s)	125, 200, 378, 398
NciI	CCSGG	1 cut(s)	434
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	3 cut(s)	38, 291, 487
NlaIII	CATG	2 cut(s)	84, 219
NlaIV	GGNNCC	3 cut(s)	122, 129, 204
PfeI	GAWTC	2 cut(s)	70, 389
PkrI	GCNGC	4 cut(s)	132, 352, 355, 612
PpuMI	RGGWCCY	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	4 cut(s)	123, 198, 376, 396
PspGI	CCWGG	4 cut(s)	123, 198, 376, 396
PspN4I	GGNNCC	3 cut(s)	122, 129, 204
PspPI	GGNCC	4 cut(s)	29, 77, 245, 362
PspPPI	RGGWCCY	1 cut(s)	29
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SatI	GCNGC	4 cut(s)	131, 351, 354, 611
Sau3AI	GATC	3 cut(s)	38, 291, 487
Sau96I	GGNCC	4 cut(s)	29, 77, 245, 362
ScrFI	CCNGG	5 cut(s)	125, 200, 378, 398, 434
SetI	ASST	9 cut(s)	31, 79, 129, 169, 211, 241, 289, 411, 560
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	4 cut(s)	29, 77, 245, 362
Sse9I	AATT	5 cut(s)	49, 155, 175, 229, 634
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	5 cut(s)	123, 198, 376, 396, 432
StyI	CCWWGG	1 cut(s)	542
TaqI	TCGA	1 cut(s)	169
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	5 cut(s)	49, 155, 175, 229, 634
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	70, 389
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	3 cut(s)	350, 353, 610
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	444
VpaK11BI	GGWCC	4 cut(s)	29, 77, 245, 362
XapI	RAATTY	2 cut(s)	49, 175
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.