Rh2CG249300

pcf11p-similar protein 4

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
26332108 .. 26333539
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG249300.1

Sequence Viewer

Length: 1134 bp
ATGATGCAAGTCTACGGAAACCAGAGAGGTCCTTATGGACCAATCAAGAATTCTATGGGTTCTGTCAAGAATCAAGGTCCATGTAAACCACGCTATATGCCTTTTCCGGCTAATCACCGGAACCAGGTGCCATCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATCTCCACAAACCCTGGTGCCACCTTATTCATGTGGTGGGTACAATTTTCAAGGGCAGGGTGGTTCTACTTCAGCAAGTTCTGTCCCTCATCGTCTACCACCGCAAGGCGTATCTCCGGTTAACAGTGCTGGTCCAGTAGCCTCTGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTCATTGAAAAATCAAAGCAGAGGAGTACTGGAGGGTACTAGTTCACTAAATTCTCTACCTCTTGTACCACAGCGAGATGCATTTCCTGTTCAAAATGCTGCTGCTGATGTTCCAGTAGTAGTTCTTGGTTTGATTGATTCTCTCCTGGCACAAGGTGTCATTTCGTTGAAGAGACAAAGCCCGGTACTGAAAGAGGAGAAGGATGCTGTGGTAGGATGTGAGTTTTCCGGCCTTGATCTAAATCTGCGTCACGAATCTGTGGTAATCAGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAAAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACCTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGTAGAGGCTGAGACTGAGGCATTACCTTCTGGTGTAGTTTTGTGCGTTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCACAGACGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTGCTGTTTACTTGAATGCGCCTCAGGGGCCAGCTCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGACTTGA

Protein Analysis

377

Amino Acids

41.19

Weight (kDa)

9.07

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_PCFS4 PF23228 302 - 368 4.2e-28 PCFS4 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 127, 202
AccB7I CCANNNNNTGG 1 cut(s) 1095
AccI GTMKAC 2 cut(s) 12, 280
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 5 cut(s) 287, 754, 881, 926, 1123
AclWI GGATC 2 cut(s) 942, 1065
AcsI RAATTY 3 cut(s) 49, 175, 415
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 2 cut(s) 359, 521
AfaI GTAC 5 cut(s) 227, 393, 403, 432, 552
AfiI CCNNNNNNNGG 4 cut(s) 124, 137, 290, 1095
AgsI TTSAA 6 cut(s) 236, 373, 458, 535, 688, 1027
AhlI ACTAGT 2 cut(s) 404, 899
AjnI CCWGG 3 cut(s) 123, 198, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AloI GAACNNNNNNTCC 2 cut(s) 728, 760
AluBI AGCT 3 cut(s) 636, 672, 1046
AluI AGCT 3 cut(s) 636, 672, 1046
Alw26I GTCTC 3 cut(s) 348, 532, 818
AlwI GGATC 2 cut(s) 942, 1065
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 3 cut(s) 595, 676, 1040
ApeKI GCWGC 3 cut(s) 464, 467, 708
ApoI RAATTY 3 cut(s) 49, 175, 415
AspLEI GCGC 1 cut(s) 1033
AspS9I GGNCC 6 cut(s) 29, 38, 77, 317, 1040, 1073
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 5 cut(s) 29, 38, 77, 317, 1073
AxyI CCTNAGG 1 cut(s) 1035
BanI GGYRCC 2 cut(s) 127, 202
BbsI GAAGAC 1 cut(s) 902
BbvI GCAGC 3 cut(s) 451, 454, 720
BccI CCATC 3 cut(s) 139, 193, 1048
BciT130I CCWGG 3 cut(s) 125, 200, 512
BcnI CCSGG 1 cut(s) 548
BcoDI GTCTC 3 cut(s) 348, 532, 818
BcuI ACTAGT 2 cut(s) 404, 899
BfaI CTAG 2 cut(s) 405, 900
BfmI CTRYAG 1 cut(s) 1077
BglI GCCNNNNNGGC 1 cut(s) 1039
BisI GCNGC 3 cut(s) 465, 468, 709
BlsI GCNGC 3 cut(s) 466, 469, 710
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 4 cut(s) 125, 200, 512, 548
Bme18I GGWCC 5 cut(s) 29, 38, 77, 317, 1073
BmgT120I GGNCC 6 cut(s) 29, 38, 77, 317, 1040, 1073
BmiI GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
BmrFI CCNGG 4 cut(s) 125, 200, 512, 548
BmsI GCATC 2 cut(s) 433, 559
BpiI GAAGAC 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 198, 656
BsaWI WCCGGW 5 cut(s) 117, 301, 681, 738, 1048
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 137, 290, 1095
Bse1I ACTGG 4 cut(s) 320, 399, 479, 870
Bse21I CCTNAGG 1 cut(s) 1035
Bse3DI GCAATG 1 cut(s) 668
Bse8I GATNNNNATC 1 cut(s) 606
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 3 cut(s) 125, 200, 512
BseDI CCNNGG 2 cut(s) 198, 656
BseGI GGATG 4 cut(s) 574, 587, 747, 1008
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 4 cut(s) 124, 137, 290, 1095
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 3 cut(s) 813, 819, 1049
BseNI ACTGG 4 cut(s) 320, 399, 479, 870
BseRI GAGGAG 2 cut(s) 402, 575
BseXI GCAGC 3 cut(s) 451, 454, 720
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 597, 678, 1042
BshNI GGYRCC 2 cut(s) 127, 202
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 8 cut(s) 107, 118, 302, 548, 594, 682, 739, 1049
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 124, 137, 290, 1095
BsmAI GTCTC 3 cut(s) 348, 532, 818
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 3 cut(s) 597, 678, 1042
Bso31I GGTCTC 1 cut(s) 348
Bsp13I TCCGGA 1 cut(s) 1048
Bsp143I GATC 4 cut(s) 363, 601, 934, 1057
BspACI CCGC 5 cut(s) 287, 754, 881, 926, 1123
BspANI GGCC 3 cut(s) 597, 678, 1042
BspCNI CTCAG 3 cut(s) 814, 820, 1048
BspEI TCCGGA 1 cut(s) 1048
BspHI TCATGA 1 cut(s) 985
BspLI GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
BspPI GGATC 2 cut(s) 942, 1065
BspT107I GGYRCC 2 cut(s) 127, 202
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 668
BsrI ACTGG 4 cut(s) 320, 399, 479, 870
BssECI CCNNGG 2 cut(s) 198, 656
BssMI GATC 4 cut(s) 363, 601, 934, 1057
BssT1I CCWWGG 1 cut(s) 656
Bst2UI CCWGG 3 cut(s) 125, 200, 512
Bst4CI ACNGT 2 cut(s) 311, 1068
Bst6I CTCTTC 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 758, 1044
BstDEI CTNAG 3 cut(s) 822, 828, 1035
BstF5I GGATG 4 cut(s) 574, 587, 747, 1008
BstHHI GCGC 1 cut(s) 1033
BstKTI GATC 4 cut(s) 366, 604, 937, 1060
BstMAI GTCTC 3 cut(s) 348, 532, 818
BstMBI GATC 4 cut(s) 363, 601, 934, 1057
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 1039
BstNI CCWGG 3 cut(s) 125, 200, 512
BstNSI RCATGY 2 cut(s) 728, 799
BstSCI CCNGG 4 cut(s) 123, 198, 510, 546
BstSFI CTRYAG 1 cut(s) 1077
BstV1I GCAGC 3 cut(s) 451, 454, 720
BstV2I GAAGAC 1 cut(s) 902
BstXI CCANNNNNNTGG 1 cut(s) 877
Bsu36I CCTNAGG 1 cut(s) 1035
BsuRI GGCC 3 cut(s) 597, 678, 1042
BtsCI GGATG 4 cut(s) 574, 587, 747, 1008
BtsIMutI CAGTG 2 cut(s) 316, 877
Cac8I GCNNGC 2 cut(s) 758, 1044
CciI TCATGA 1 cut(s) 985
CfoI GCGC 1 cut(s) 1033
Cfr13I GGNCC 6 cut(s) 29, 38, 77, 317, 1040, 1073
CseI GACGC 2 cut(s) 602, 971
CsiI ACCWGGT 1 cut(s) 123
Csp6I GTAC 5 cut(s) 226, 392, 402, 431, 551
CviAII CATG 6 cut(s) 81, 216, 725, 796, 986, 1085
CviQI GTAC 5 cut(s) 226, 392, 402, 431, 551
DdeI CTNAG 3 cut(s) 822, 828, 1035
DpnI GATC 4 cut(s) 365, 603, 936, 1059
DpnII GATC 4 cut(s) 363, 601, 934, 1057
DraIII CACNNNGTG 2 cut(s) 359, 521
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
EciI GGCGGA 1 cut(s) 896
Eco130I CCWWGG 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 5 cut(s) 29, 38, 77, 317, 1073
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 1035
EcoO109I RGGNCCY 2 cut(s) 29, 1073
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 3 cut(s) 123, 198, 510
EcoT14I CCWWGG 1 cut(s) 656
EcoT22I ATGCAT 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
FaqI GGGAC 1 cut(s) 254
FatI CATG 6 cut(s) 80, 215, 724, 795, 985, 1084
FauI CCCGC 1 cut(s) 761
FauNDI CATATG 1 cut(s) 714
FblI GTMKAC 2 cut(s) 12, 280
Fnu4HI GCNGC 3 cut(s) 465, 468, 709
FokI GGATG 4 cut(s) 581, 594, 754, 1015
Fsp4HI GCNGC 3 cut(s) 465, 468, 709
FspBI CTAG 2 cut(s) 405, 900
GlaI GCGC 1 cut(s) 1032
GluI GCNGC 3 cut(s) 465, 468, 709
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 3 cut(s) 597, 678, 1042
HapII CCGG 8 cut(s) 107, 118, 302, 548, 594, 682, 739, 1049
HgaI GACGC 2 cut(s) 602, 971
HhaI GCGC 1 cut(s) 1033
Hin1II CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
Hin6I GCGC 1 cut(s) 1031
HinP1I GCGC 1 cut(s) 1031
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 70, 503, 620
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 8 cut(s) 107, 118, 302, 548, 594, 682, 739, 1049
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 6 cut(s) 13, 86, 281, 307, 410, 1021
Hpy188I TCNGA 2 cut(s) 939, 1102
Hpy188III TCNNGA 6 cut(s) 46, 67, 617, 730, 986, 1049
Hpy8I GTNNAC 6 cut(s) 13, 86, 281, 307, 410, 1021
HpyAV CCTTC 2 cut(s) 559, 849
HpyCH4III ACNGT 2 cut(s) 311, 1068
HpyCH4IV ACGT 1 cut(s) 1117
HpyCH4V TGCA 4 cut(s) 7, 446, 785, 957
HpyF10VI GCNNNNNNNGC 1 cut(s) 1039
HpyF3I CTNAG 3 cut(s) 822, 828, 1035
HpySE526I ACGT 1 cut(s) 1117
Hsp92II CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
HspAI GCGC 1 cut(s) 1031
Kpn2I TCCGGA 1 cut(s) 1048
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 4 cut(s) 363, 601, 934, 1057
LmnI GCTCC 1 cut(s) 1051
Lsp1109I GCAGC 3 cut(s) 451, 454, 720
LweI GCATC 2 cut(s) 433, 559
MabI ACCWGGT 1 cut(s) 123
MaeI CTAG 2 cut(s) 405, 900
MaeII ACGT 1 cut(s) 1117
MaeIII GTNAC 4 cut(s) 614, 773, 805, 1062
MalI GATC 4 cut(s) 365, 603, 936, 1059
MboI GATC 4 cut(s) 363, 601, 934, 1057
MboII GAAGA 5 cut(s) 152, 547, 745, 907, 920
MluCI AATT 5 cut(s) 49, 155, 175, 229, 415
MmeI TCCRAC 1 cut(s) 1080
Mph1103I ATGCAT 1 cut(s) 448
MroI TCCGGA 1 cut(s) 1048
MseI TTAA 1 cut(s) 306
MspI CCGG 8 cut(s) 107, 118, 302, 548, 594, 682, 739, 1049
MspR9I CCNGG 4 cut(s) 125, 200, 512, 548
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 3 cut(s) 125, 200, 512
MwoI GCNNNNNNNGC 1 cut(s) 1039
NciI CCSGG 1 cut(s) 548
NdeI CATATG 1 cut(s) 714
NdeII GATC 4 cut(s) 363, 601, 934, 1057
NlaIII CATG 6 cut(s) 84, 219, 728, 799, 989, 1088
NlaIV GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
NmuCI GTSAC 2 cut(s) 614, 1062
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 2 cut(s) 728, 799
PagI TCATGA 1 cut(s) 985
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 3 cut(s) 70, 503, 620
PflMI CCANNNNNTGG 1 cut(s) 1095
PkrI GCNGC 3 cut(s) 466, 469, 710
PpuMI RGGWCCY 2 cut(s) 29, 1073
Psp5II RGGWCCY 2 cut(s) 29, 1073
Psp6I CCWGG 3 cut(s) 123, 198, 510
PspGI CCWGG 3 cut(s) 123, 198, 510
PspN4I GGNNCC 5 cut(s) 122, 129, 204, 1041, 1074
PspPI GGNCC 6 cut(s) 29, 38, 77, 317, 1040, 1073
PspPPI RGGWCCY 2 cut(s) 29, 1073
RsaI GTAC 5 cut(s) 227, 393, 403, 432, 552
RsaNI GTAC 5 cut(s) 226, 392, 402, 431, 551
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 465, 468, 709
Sau3AI GATC 4 cut(s) 363, 601, 934, 1057
Sau96I GGNCC 6 cut(s) 29, 38, 77, 317, 1040, 1073
ScaI AGTACT 1 cut(s) 393
ScrFI CCNGG 4 cut(s) 125, 200, 512, 548
SexAI ACCWGGT 1 cut(s) 123
SfaNI GCATC 2 cut(s) 433, 559
SfcI CTRYAG 1 cut(s) 1077
SinI GGWCC 5 cut(s) 29, 38, 77, 317, 1073
SpeI ACTAGT 2 cut(s) 404, 899
Sse9I AATT 5 cut(s) 49, 155, 175, 229, 415
SsiI CCGC 5 cut(s) 287, 754, 881, 926, 1123
SspMI CTAG 2 cut(s) 405, 900
StyD4I CCNGG 4 cut(s) 123, 198, 510, 546
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 2 cut(s) 311, 1068
TaiI ACGT 1 cut(s) 1120
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 3 cut(s) 124, 128, 1050
TasI AATT 5 cut(s) 49, 155, 175, 229, 415
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 3 cut(s) 70, 503, 620
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 316, 877
TseFI GTSAC 2 cut(s) 614, 1062
TseI GCWGC 3 cut(s) 464, 467, 708
Tsp45I GTSAC 2 cut(s) 614, 1062
TspDTI ATGAA 2 cut(s) 204, 921
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 316, 877
Van91I CCANNNNNTGG 1 cut(s) 1095
VpaK11BI GGWCC 5 cut(s) 29, 38, 77, 317, 1073
XapI RAATTY 3 cut(s) 49, 175, 415
XceI RCATGY 2 cut(s) 728, 799
XmiI GTMKAC 2 cut(s) 12, 280
XspI CTAG 2 cut(s) 405, 900
ZrmI AGTACT 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.