Rw2G019080

pcf11p-similar protein 4

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
25022447 .. 25023547
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019080.1

Sequence Viewer

Length: 1101 bp
ATGCAAGTCTACGTAGACCAGAGAGGTCCTTATGGTCCAATGAAGAATTCTATGGGTCCTGTCAAGAATCAAGATCCATGTAAGCCACGCTATATGCCTTTTCCTGCTAATCACCGGAACCAGGTGCCGCCGGTCGGTCATTGTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATCTCCACAAACCCTGGTGCCACCTTATTCATCTGGTGGGTACAATTTTCAAGGGCAGGGTGGTTCTACTTCAGCAAGTTCTGTCCCTCATCGTCTACCACCGCAAGGAGTCTCTGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTCATTGAAAAATCAAAGCAGAAGAGGACTGGAGGGTACTAGTTCACTAAATTTTGTACCTCCTGTACCACAGCGAGGGGCATTTCCTGTTCAAAATGCTGCTGTTGATGTTCCAGTAGTAGTTCCTGGTTTAATTGATTCTCTCCTAGCACAAGGTGTGATTTCGTTGAAGAAACAAAGCCCGGCACTGAAAGAGGAGAAGGCTGCTGTGGTAGGATGTGAGTTTTCCGGCCTTGATCTAAATCTGCGTCACGAATCTGTGGTAATCGGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAGAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACAGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACTTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGTAGAGGCTGAGGCTGAGGCATTACCTTCTGGTGTAGTTTTGTGCGCTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAATGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCGCAGATGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTGCTGTTTATTTGAATGCGCCTCAGGGGCCAGCGCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGACTTGA

Protein Analysis

366

Amino Acids

40.14

Weight (kDa)

8.99

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_PCFS4 PF23228 291 - 357 5e-28 PCFS4 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 925
AccB1I GGYRCC 2 cut(s) 124, 199
AccB7I CCANNNNNTGG 1 cut(s) 1062
AccI GTMKAC 3 cut(s) 9, 15, 277
AciI CCGC 6 cut(s) 128, 284, 721, 848, 893, 1090
AclWI GGATC 3 cut(s) 68, 909, 1032
AcsI RAATTY 3 cut(s) 46, 172, 382
AcuI CTGAAG 1 cut(s) 237
AdeI CACNNNGTG 2 cut(s) 326, 488
AfaI GTAC 4 cut(s) 224, 370, 390, 399
AfiI CCNNNNNNNGG 5 cut(s) 121, 134, 287, 407, 1062
AgsI TTSAA 6 cut(s) 233, 340, 425, 502, 655, 994
AhlI ACTAGT 1 cut(s) 371
AjnI CCWGG 3 cut(s) 120, 195, 457
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AloI GAACNNNNNNTCC 2 cut(s) 695, 727
AluBI AGCT 1 cut(s) 639
AluI AGCT 1 cut(s) 639
Alw26I GTCTC 2 cut(s) 298, 315
AlwI GGATC 3 cut(s) 68, 909, 1032
AoxI GGCC 3 cut(s) 562, 643, 1007
ApeKI GCWGC 4 cut(s) 431, 536, 675, 827
ApoI RAATTY 3 cut(s) 46, 172, 382
AspLEI GCGC 4 cut(s) 827, 926, 1000, 1015
AspS9I GGNCC 5 cut(s) 26, 35, 56, 1007, 1040
AsuC2I CCSGG 1 cut(s) 515
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 4 cut(s) 26, 35, 56, 1040
AxyI CCTNAGG 1 cut(s) 1002
BanI GGYRCC 2 cut(s) 124, 199
BbsI GAAGAC 1 cut(s) 869
BbvCI CCTCAGC 2 cut(s) 789, 795
BbvI GCAGC 4 cut(s) 418, 523, 687, 814
BccI CCATC 2 cut(s) 190, 1015
BciT130I CCWGG 3 cut(s) 122, 197, 459
BcnI CCSGG 1 cut(s) 515
BcoDI GTCTC 2 cut(s) 298, 315
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 2 cut(s) 372, 479
BfmI CTRYAG 1 cut(s) 1044
BfoI RGCGCY 1 cut(s) 1016
BglI GCCNNNNNGGC 1 cut(s) 1006
BisI GCNGC 5 cut(s) 128, 432, 537, 676, 828
BlsI GCNGC 5 cut(s) 129, 433, 538, 677, 829
Bme1390I CCNGG 4 cut(s) 122, 197, 459, 515
Bme18I GGWCC 4 cut(s) 26, 35, 56, 1040
BmgT120I GGNCC 5 cut(s) 26, 35, 56, 1007, 1040
BmiI GGNNCC 6 cut(s) 57, 119, 126, 201, 1008, 1041
BmrFI CCNGG 4 cut(s) 122, 197, 459, 515
BmsI GCATC 1 cut(s) 919
BpiI GAAGAC 1 cut(s) 869
BpmI CTGGAG 1 cut(s) 383
Bpu10I CCTNAGC 2 cut(s) 789, 795
BpuMI CCSGG 1 cut(s) 515
BsaAI YACGTR 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 573
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 195, 623
BsaWI WCCGGW 2 cut(s) 114, 648
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 134, 287, 407, 1062
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 3 cut(s) 366, 446, 837
Bse21I CCTNAGG 1 cut(s) 1002
Bse3DI GCAATG 1 cut(s) 635
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 3 cut(s) 122, 197, 459
BseDI CCNNGG 2 cut(s) 195, 623
BseGI GGATG 3 cut(s) 554, 714, 975
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 5 cut(s) 121, 134, 287, 407, 1062
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 3 cut(s) 780, 786, 1016
BseNI ACTGG 3 cut(s) 366, 446, 837
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 4 cut(s) 418, 523, 687, 814
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 564, 645, 1009
BshNI GGYRCC 2 cut(s) 124, 199
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 6 cut(s) 115, 131, 515, 561, 649, 1016
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 5 cut(s) 121, 134, 287, 407, 1062
BsmAI GTCTC 2 cut(s) 298, 315
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 1000
BsnI GGCC 3 cut(s) 564, 645, 1009
Bso31I GGTCTC 1 cut(s) 315
Bsp143I GATC 5 cut(s) 73, 330, 568, 901, 1024
BspACI CCGC 6 cut(s) 128, 284, 721, 848, 893, 1090
BspANI GGCC 3 cut(s) 564, 645, 1009
BspCNI CTCAG 3 cut(s) 781, 787, 1015
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 6 cut(s) 57, 119, 126, 201, 1008, 1041
BspPI GGATC 3 cut(s) 68, 909, 1032
BspT107I GGYRCC 2 cut(s) 124, 199
BspTNI GGTCTC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 3 cut(s) 366, 446, 837
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 195, 623
BssMI GATC 5 cut(s) 73, 330, 568, 901, 1024
BssT1I CCWWGG 1 cut(s) 623
Bst2UI CCWGG 3 cut(s) 122, 197, 459
Bst4CI ACNGT 1 cut(s) 1035
Bst6I CTCTTC 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 725, 1011
BstDEI CTNAG 3 cut(s) 789, 795, 1002
BstF5I GGATG 3 cut(s) 554, 714, 975
BstH2I RGCGCY 1 cut(s) 1016
BstHHI GCGC 4 cut(s) 827, 926, 1000, 1015
BstKTI GATC 5 cut(s) 76, 333, 571, 904, 1027
BstMAI GTCTC 2 cut(s) 298, 315
BstMBI GATC 5 cut(s) 73, 330, 568, 901, 1024
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 923, 1006
BstNI CCWGG 3 cut(s) 122, 197, 459
BstNSI RCATGY 2 cut(s) 695, 766
BstSCI CCNGG 4 cut(s) 120, 195, 457, 513
BstSFI CTRYAG 1 cut(s) 1044
BstSNI TACGTA 1 cut(s) 13
BstV1I GCAGC 4 cut(s) 418, 523, 687, 814
BstV2I GAAGAC 1 cut(s) 869
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 1002
BsuRI GGCC 3 cut(s) 564, 645, 1009
BtsCI GGATG 3 cut(s) 554, 714, 975
BtsIMutI CAGTG 2 cut(s) 518, 844
Cac8I GCNNGC 2 cut(s) 725, 1011
CciI TCATGA 1 cut(s) 952
CfoI GCGC 4 cut(s) 827, 926, 1000, 1015
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 5 cut(s) 26, 35, 56, 1007, 1040
CseI GACGC 1 cut(s) 569
CsiI ACCWGGT 1 cut(s) 120
Csp6I GTAC 4 cut(s) 223, 369, 389, 398
CviAII CATG 5 cut(s) 78, 692, 763, 953, 1052
CviQI GTAC 4 cut(s) 223, 369, 389, 398
DdeI CTNAG 3 cut(s) 789, 795, 1002
DpnI GATC 5 cut(s) 75, 332, 570, 903, 1026
DpnII GATC 5 cut(s) 73, 330, 568, 901, 1024
DraIII CACNNNGTG 2 cut(s) 326, 488
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
EciI GGCGGA 1 cut(s) 863
Eco105I TACGTA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 623
Eco31I GGTCTC 1 cut(s) 315
Eco47I GGWCC 4 cut(s) 26, 35, 56, 1040
Eco57I CTGAAG 1 cut(s) 237
Eco81I CCTNAGG 1 cut(s) 1002
EcoO109I RGGNCCY 3 cut(s) 26, 56, 1040
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 3 cut(s) 120, 195, 457
EcoT14I CCWWGG 1 cut(s) 623
ErhI CCWWGG 1 cut(s) 623
FaeI CATG 5 cut(s) 81, 695, 766, 956, 1055
FaqI GGGAC 1 cut(s) 251
FatI CATG 5 cut(s) 77, 691, 762, 952, 1051
FauI CCCGC 1 cut(s) 728
FauNDI CATATG 1 cut(s) 681
FblI GTMKAC 3 cut(s) 9, 15, 277
Fnu4HI GCNGC 5 cut(s) 128, 432, 537, 676, 828
FokI GGATG 3 cut(s) 561, 721, 982
Fsp4HI GCNGC 5 cut(s) 128, 432, 537, 676, 828
FspBI CTAG 2 cut(s) 372, 479
FspI TGCGCA 1 cut(s) 925
GlaI GCGC 4 cut(s) 826, 925, 999, 1014
GluI GCNGC 5 cut(s) 128, 432, 537, 676, 828
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 1016
HaeIII GGCC 3 cut(s) 564, 645, 1009
HapII CCGG 6 cut(s) 115, 131, 515, 561, 649, 1016
HgaI GACGC 1 cut(s) 569
HhaI GCGC 4 cut(s) 827, 926, 1000, 1015
Hin1II CATG 5 cut(s) 81, 695, 766, 956, 1055
Hin6I GCGC 4 cut(s) 825, 924, 998, 1013
HinP1I GCGC 4 cut(s) 825, 924, 998, 1013
HinfI GANTC 4 cut(s) 67, 291, 470, 587
HpaII CCGG 6 cut(s) 115, 131, 515, 561, 649, 1016
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 4 cut(s) 10, 16, 278, 377
Hpy188I TCNGA 2 cut(s) 906, 1069
Hpy188III TCNNGA 5 cut(s) 64, 71, 584, 697, 953
Hpy8I GTNNAC 4 cut(s) 10, 16, 278, 377
HpyAV CCTTC 2 cut(s) 526, 816
HpyCH4III ACNGT 1 cut(s) 1035
HpyCH4IV ACGT 2 cut(s) 12, 1084
HpyCH4V TGCA 2 cut(s) 4, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 923, 1006
HpyF3I CTNAG 3 cut(s) 789, 795, 1002
HpySE526I ACGT 2 cut(s) 12, 1084
Hsp92II CATG 5 cut(s) 81, 695, 766, 956, 1055
HspAI GCGC 4 cut(s) 825, 924, 998, 1013
Kzo9I GATC 5 cut(s) 73, 330, 568, 901, 1024
Lsp1109I GCAGC 4 cut(s) 418, 523, 687, 814
LweI GCATC 1 cut(s) 919
MabI ACCWGGT 1 cut(s) 120
MaeI CTAG 2 cut(s) 372, 479
MaeII ACGT 2 cut(s) 12, 1084
MaeIII GTNAC 4 cut(s) 581, 740, 772, 1029
MalI GATC 5 cut(s) 75, 332, 570, 903, 1026
MboI GATC 5 cut(s) 73, 330, 568, 901, 1024
MboII GAAGA 8 cut(s) 55, 149, 366, 514, 674, 712, 874, 887
MflI RGATCY 1 cut(s) 73
MluCI AATT 6 cut(s) 46, 152, 172, 226, 382, 465
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 1047
MseI TTAA 1 cut(s) 464
MspI CCGG 6 cut(s) 115, 131, 515, 561, 649, 1016
MspR9I CCNGG 4 cut(s) 122, 197, 459, 515
Mva1269I GAATGC 1 cut(s) 1000
MvaI CCWGG 3 cut(s) 122, 197, 459
MwoI GCNNNNNNNGC 2 cut(s) 923, 1006
NciI CCSGG 1 cut(s) 515
NdeI CATATG 1 cut(s) 681
NdeII GATC 5 cut(s) 73, 330, 568, 901, 1024
NlaIII CATG 5 cut(s) 81, 695, 766, 956, 1055
NlaIV GGNNCC 6 cut(s) 57, 119, 126, 201, 1008, 1041
NmuCI GTSAC 2 cut(s) 581, 1029
NsbI TGCGCA 1 cut(s) 925
NspI RCATGY 2 cut(s) 695, 766
PagI TCATGA 1 cut(s) 952
PctI GAATGC 1 cut(s) 1000
PfeI GAWTC 3 cut(s) 67, 470, 587
PflMI CCANNNNNTGG 1 cut(s) 1062
PkrI GCNGC 5 cut(s) 129, 433, 538, 677, 829
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 13
PpuMI RGGWCCY 3 cut(s) 26, 56, 1040
Psp5II RGGWCCY 3 cut(s) 26, 56, 1040
Psp6I CCWGG 3 cut(s) 120, 195, 457
PspGI CCWGG 3 cut(s) 120, 195, 457
PspN4I GGNNCC 6 cut(s) 57, 119, 126, 201, 1008, 1041
PspPI GGNCC 5 cut(s) 26, 35, 56, 1007, 1040
PspPPI RGGWCCY 3 cut(s) 26, 56, 1040
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 4 cut(s) 224, 370, 390, 399
RsaNI GTAC 4 cut(s) 223, 369, 389, 398
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 5 cut(s) 128, 432, 537, 676, 828
Sau3AI GATC 5 cut(s) 73, 330, 568, 901, 1024
Sau96I GGNCC 5 cut(s) 26, 35, 56, 1007, 1040
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 4 cut(s) 122, 197, 459, 515
SexAI ACCWGGT 1 cut(s) 120
SfaNI GCATC 1 cut(s) 919
SfcI CTRYAG 1 cut(s) 1044
SinI GGWCC 4 cut(s) 26, 35, 56, 1040
SnaBI TACGTA 1 cut(s) 13
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 6 cut(s) 46, 152, 172, 226, 382, 465
SsiI CCGC 6 cut(s) 128, 284, 721, 848, 893, 1090
SspMI CTAG 2 cut(s) 372, 479
StyD4I CCNGG 4 cut(s) 120, 195, 457, 513
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 1 cut(s) 1035
TaiI ACGT 2 cut(s) 15, 1087
TaqI TCGA 1 cut(s) 166
TaqII GACCGA 2 cut(s) 125, 1017
TasI AATT 6 cut(s) 46, 152, 172, 226, 382, 465
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 3 cut(s) 67, 470, 587
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 2 cut(s) 525, 844
TseFI GTSAC 2 cut(s) 581, 1029
TseI GCWGC 4 cut(s) 431, 536, 675, 827
Tsp45I GTSAC 2 cut(s) 581, 1029
TspDTI ATGAA 3 cut(s) 56, 201, 888
TspRI CASTG 2 cut(s) 525, 844
Van91I CCANNNNNTGG 1 cut(s) 1062
VpaK11BI GGWCC 4 cut(s) 26, 35, 56, 1040
XapI RAATTY 3 cut(s) 46, 172, 382
XceI RCATGY 2 cut(s) 695, 766
XmiI GTMKAC 3 cut(s) 9, 15, 277
XspI CTAG 2 cut(s) 372, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.