Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

17604797 .. 17605516

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0189100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTAGTCGAAAACTACTATATCAGTCGTGTACGACAAACTAGGCAACCCTTGATCAACAATATTCAGTCCCAACTTCCACAAGACGCAGTTCTACCCATCAAATTCAAACGCTACAACTTATCAATAAGCGGTTGGGACTCAGAAGATAATGATGTCCCAATGATAGTTATTCCAAATCCAAAAGTTTTAAGAGCTCAAGAAACCATTACAGAGGTCTCTCGTGCCGAGCTATTGTCTGATAGGAGTGCATCCACTGTGCTCATGTATGAGGTTCTTTCGCGGATGGATGTCCCAGAAGATGAGCGACCAGTCATCATAGAAAAAATATTTCTGGTGCTCGAATCGGCCAATACCATGCTGCCTATCTGTGTGGACATCAAACGTGTTACTTGCCGACTTCAATATATGAGGGATCGATCCGATCGGATGATTCCGAGGGTTACAAATGAATCCATGGATACATATGAGGTCAGGCCTATTCCAGCAGCTAAATCATTCATTAAAGATTTGGAGAGAGTGAGCCTTGATGATTCGGAAGATGTAAAAGAGTCGTGTGTTATTTGTATGGAGTGTTTTGAGGGTGGCGTTCAAGCTGTTCGCCTGCCTTGTTCACACATTTTCCATGAAAATTGCAGTGTCCAGTGGCTAATGACCAGTCACTTGTGTCCTTTGTGCCGATACCCAATGCCTTGTGAAGAAGATTTGCTTGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

239

Amino Acids

27.6

Weight (kDa)

5.06

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	182 - 227	1.3e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	185 - 227	2.7e-12	Ring finger domain
zf-RING_11	PF17123	186 - 212	5.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	186 - 226	3.5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	132, 283
AclWI	GGATC	2 cut(s)	414, 423
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	33
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	109, 404, 593
AjuI	GAANNNNNNNTTGG	1 cut(s)	693
AluBI	AGCT	4 cut(s)	197, 232, 491, 596
AluI	AGCT	4 cut(s)	197, 232, 491, 596
Alw21I	GWGCWC	3 cut(s)	199, 264, 342
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	414, 423
AoxI	GGCC	2 cut(s)	348, 476
ApeKI	GCWGC	2 cut(s)	361, 488
ApoI	RAATTY	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	222
Bbv12I	GWGCWC	3 cut(s)	199, 264, 342
BbvI	GCAGC	2 cut(s)	348, 500
BccI	CCATC	2 cut(s)	107, 280
BciVI	GTATCC	1 cut(s)	454
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	362, 489
BlsI	GCNGC	2 cut(s)	363, 490
BmsI	GCATC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	437, 456
Bse1I	ACTGG	3 cut(s)	311, 643, 657
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	437, 456
BseGI	GGATG	4 cut(s)	251, 291, 295, 435
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	3 cut(s)	311, 643, 657
BseXI	GCAGC	2 cut(s)	348, 500
Bsh1236I	CGCG	1 cut(s)	283
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	350, 478
BshVI	ATCGAT	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	427
BsiHKAI	GWGCWC	3 cut(s)	199, 264, 342
BslFI	GGGAC	4 cut(s)	55, 143, 152, 278
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	4 cut(s)	55, 143, 152, 278
BsnI	GGCC	2 cut(s)	350, 478
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	199, 264, 342
Bsp143I	GATC	4 cut(s)	54, 415, 419, 424
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	2 cut(s)	132, 283
BspANI	GGCC	2 cut(s)	350, 478
BspCNI	CTCAG	1 cut(s)	155
BspDI	ATCGAT	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	283
BspPI	GGATC	2 cut(s)	414, 423
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	3 cut(s)	311, 643, 657
BssECI	CCNNGG	2 cut(s)	437, 456
BssMI	GATC	4 cut(s)	54, 415, 419, 424
BssSI	CACGAG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	1 cut(s)	142
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	4 cut(s)	251, 291, 295, 435
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	4 cut(s)	57, 418, 422, 427
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	4 cut(s)	54, 415, 419, 424
BstMCI	CGRYCG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	348, 500
Bsu15I	ATCGAT	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	350, 478
BsuTUI	ATCGAT	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	251, 291, 295, 435
BtsI	GCAGTG	1 cut(s)	643
BtsIMutI	CAGTG	3 cut(s)	255, 643, 650
Cac8I	GCNNGC	1 cut(s)	605
ClaI	ATCGAT	1 cut(s)	418
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	4 cut(s)	265, 358, 457, 626
CviJI	RGCY	8 cut(s)	197, 232, 350, 478, 491, 525, 596, 649
CviKI_1	RGCY	8 cut(s)	197, 232, 350, 478, 491, 525, 596, 649
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	4 cut(s)	56, 417, 421, 426
DpnII	GATC	4 cut(s)	54, 415, 419, 424
EaeI	YGGCCR	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	456
Eco147I	AGGCCT	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	4 cut(s)	268, 361, 460, 629
FalI	AAGNNNNNCTT	1 cut(s)	693
FaqI	GGGAC	4 cut(s)	55, 143, 152, 278
FatI	CATG	4 cut(s)	264, 357, 456, 625
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	362, 489
FokI	GGATG	4 cut(s)	238, 298, 302, 442
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	362, 489
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	2 cut(s)	362, 489
HaeIII	GGCC	2 cut(s)	350, 478
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	268, 361, 460, 629
HinfI	GANTC	6 cut(s)	140, 344, 433, 452, 533, 551
Hpy166II	GTNNAC	3 cut(s)	32, 376, 614
Hpy188I	TCNGA	6 cut(s)	145, 241, 424, 429, 438, 538
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	32, 376, 614
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	2 cut(s)	251, 636
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	4 cut(s)	268, 361, 460, 629
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	54, 415, 419, 424
LpnPI	CCDG	8 cut(s)	309, 320, 324, 460, 498, 617, 656, 670
Lsp1109I	GCAGC	2 cut(s)	348, 500
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	3 cut(s)	388, 442, 659
MalI	GATC	4 cut(s)	56, 417, 421, 426
MboI	GATC	4 cut(s)	54, 415, 419, 424
MboII	GAAGA	5 cut(s)	158, 311, 551, 710, 713
MhlI	GDGCHC	3 cut(s)	199, 264, 342
MluCI	AATT	2 cut(s)	104, 631
MlyI	GAGTC	2 cut(s)	134, 560
MnlI	CCTC	6 cut(s)	208, 265, 405, 432, 463, 574
MseI	TTAA	2 cut(s)	191, 504
MvnI	CGCG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	456
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	4 cut(s)	54, 415, 419, 424
NlaIII	CATG	4 cut(s)	268, 361, 460, 629
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	344, 433, 452, 533
PkrI	GCNGC	2 cut(s)	363, 490
Ple19I	CGATCG	1 cut(s)	427
PleI	GAGTC	2 cut(s)	134, 559
PpsI	GAGTC	2 cut(s)	134, 559
Psp124BI	GAGCTC	1 cut(s)	199
PvuI	CGATCG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	191, 504
SatI	GCNGC	2 cut(s)	362, 489
Sau3AI	GATC	4 cut(s)	54, 415, 419, 424
SchI	GAGTC	2 cut(s)	134, 560
SduI	GDGCHC	3 cut(s)	199, 264, 342
SetI	ASST	8 cut(s)	199, 219, 234, 276, 388, 474, 493, 598
SfaNI	GCATC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	104, 631
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	2 cut(s)	132, 283
SspI	AATATT	2 cut(s)	64, 330
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	3 cut(s)	9, 342, 418
TasI	AATT	2 cut(s)	104, 631
TfiI	GAWTC	4 cut(s)	344, 433, 452, 533
Tru1I	TTAA	2 cut(s)	191, 504
Tru9I	TTAA	2 cut(s)	191, 504
TscAI	CASTG	3 cut(s)	262, 643, 650
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	2 cut(s)	361, 488
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	3 cut(s)	465, 490, 642
TspRI	CASTG	3 cut(s)	262, 643, 650
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.