Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007010.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

3967 .. 5100

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007010.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgatgcaagtctacggaaaccagagaggtccttatggaccaatcaagaattctatgggttctgtcaagaatcaaggtccaagtaagccacgctatatgccttttccggctaatcaccagaaccaggtgccgccggtcagtcattttcagccccaatttcttccacctcgaccaaatttctacccatctccacaaaccctggtgccaccttattcatgtggtgggtacaattttcaagggcagggtggttctacttcagcaagttctgtccctcatcgtctaccaccgcaaggcatatctctggttaacagtgctggtccagtagcctctggtttgcttgggtctctaatggcacaaggtgtgatctcattgaaaaatcaaagcagaggaggactggaggtagtagttcctggtttgattgattctctcctggcacaaggtgtcatttcgttgaagaaacaaagcccggtacagaaagaggagaaggatgttgtggtaggatgtgagttttccggctttgatctaaatctgagtcgcgaatttgtggtaatcagcttgtatgagggtggtctgccaagtcaatgtaaaagctgtggcctccggttcaagtgtgaagaacagcacagcagccatatggattggcatgtcaagaagaaccggatgtccaaaacccgcaagcagaagccctctcgtaacttttatgcaactacaagcatgtggcttgttactgttgtagaggctgaggctgaggcattaccttctggtgtagttttgtgcgctgctgacaccagtggtgtggcagaaaagaaaatgaagactagtgatgaagaaatggttgttcctgcggacgaggatcagagtaaatgtgccttatgcacagatgcttttgttgagttttataatcatgagacagatgagtggatgtataaaggtgctgtttacttgaatgcacctcaggggccagcgccggagatggatcggtcaaagttgggtcctatagtccatgccaaatgctggtcggagggtagtaggaaacgtctgcagaggacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

350

Amino Acids

38.31

Weight (kDa)

8.75

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	900
AccB1I	GGYRCC	2 cut(s)	127, 202
AccB7I	CCANNNNNTGG	1 cut(s)	1014
AccI	GTMKAC	2 cut(s)	12, 280
AccII	CGCG	1 cut(s)	537
AciI	CCGC	4 cut(s)	131, 287, 673, 845
AclWI	GGATC	2 cut(s)	861, 984
AcsI	RAATTY	3 cut(s)	49, 175, 539
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	2 cut(s)	359, 440
AfaI	GTAC	2 cut(s)	227, 471
AfiI	CCNNNNNNNGG	3 cut(s)	124, 290, 1014
AgsI	TTSAA	5 cut(s)	236, 373, 454, 607, 946
AhlI	ACTAGT	1 cut(s)	818
AjnI	CCWGG	4 cut(s)	123, 198, 409, 429
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	647, 679
AluBI	AGCT	2 cut(s)	555, 591
AluI	AGCT	2 cut(s)	555, 591
Alw26I	GTCTC	2 cut(s)	348, 902
AlwI	GGATC	2 cut(s)	861, 984
AoxI	GGCC	2 cut(s)	595, 959
ApeKI	GCWGC	2 cut(s)	627, 779
ApoI	RAATTY	3 cut(s)	49, 175, 539
AspLEI	GCGC	2 cut(s)	779, 967
AspS9I	GGNCC	6 cut(s)	29, 38, 77, 317, 959, 992
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	5 cut(s)	29, 38, 77, 317, 992
AxyI	CCTNAGG	1 cut(s)	954
BanI	GGYRCC	2 cut(s)	127, 202
BbsI	GAAGAC	1 cut(s)	821
BbvCI	CCTCAGC	2 cut(s)	741, 747
BbvI	GCAGC	2 cut(s)	639, 766
BccI	CCATC	2 cut(s)	193, 967
BciT130I	CCWGG	4 cut(s)	125, 200, 411, 431
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	2 cut(s)	348, 902
BcuI	ACTAGT	1 cut(s)	818
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	2 cut(s)	996, 1040
BfoI	RGCGCY	1 cut(s)	968
BisI	GCNGC	3 cut(s)	131, 628, 780
BlsI	GCNGC	3 cut(s)	132, 629, 781
Bme1390I	CCNGG	5 cut(s)	125, 200, 411, 431, 467
Bme18I	GGWCC	5 cut(s)	29, 38, 77, 317, 992
BmgT120I	GGNCC	6 cut(s)	29, 38, 77, 317, 959, 992
BmiI	GGNNCC	4 cut(s)	129, 204, 960, 993
BmrFI	CCNGG	5 cut(s)	125, 200, 411, 431, 467
BmsI	GCATC	1 cut(s)	871
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	2 cut(s)	741, 747
BpuMI	CCSGG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	2 cut(s)	600, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 290, 1014
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	320, 399, 789
Bse21I	CCTNAGG	1 cut(s)	954
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	4 cut(s)	125, 200, 411, 431
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	4 cut(s)	493, 506, 666, 927
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	124, 290, 1014
BseMII	CTCAG	4 cut(s)	521, 732, 738, 968
BseNI	ACTGG	3 cut(s)	320, 399, 789
BseRI	GAGGAG	2 cut(s)	402, 494
BseXI	GCAGC	2 cut(s)	639, 766
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	597, 961
BshNI	GGYRCC	2 cut(s)	127, 202
BsiSI	CCGG	7 cut(s)	107, 134, 467, 513, 601, 658, 968
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	124, 290, 1014
BsmAI	GTCTC	2 cut(s)	348, 902
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	2 cut(s)	597, 961
Bso31I	GGTCTC	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	363, 520, 853, 976
Bsp68I	TCGCGA	1 cut(s)	537
BspACI	CCGC	4 cut(s)	131, 287, 673, 845
BspANI	GGCC	2 cut(s)	597, 961
BspCNI	CTCAG	4 cut(s)	522, 733, 739, 967
BspFNI	CGCG	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	4 cut(s)	129, 204, 960, 993
BspMAI	CTGCAG	1 cut(s)	1044
BspPI	GGATC	2 cut(s)	861, 984
BspT107I	GGYRCC	2 cut(s)	127, 202
BspTNI	GGTCTC	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	320, 399, 789
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	4 cut(s)	363, 520, 853, 976
Bst2UI	CCWGG	4 cut(s)	125, 200, 411, 431
Bst4CI	ACNGT	2 cut(s)	311, 730
BstC8I	GCNNGC	2 cut(s)	677, 963
BstDEI	CTNAG	4 cut(s)	530, 741, 747, 954
BstF5I	GGATG	4 cut(s)	493, 506, 666, 927
BstFNI	CGCG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	968
BstHHI	GCGC	2 cut(s)	779, 967
BstKTI	GATC	4 cut(s)	366, 523, 856, 979
BstMAI	GTCTC	2 cut(s)	348, 902
BstMBI	GATC	4 cut(s)	363, 520, 853, 976
BstNI	CCWGG	4 cut(s)	125, 200, 411, 431
BstNSI	RCATGY	2 cut(s)	647, 718
BstSCI	CCNGG	5 cut(s)	123, 198, 409, 429, 465
BstSFI	CTRYAG	2 cut(s)	996, 1040
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	639, 766
BstV2I	GAAGAC	1 cut(s)	821
BstXI	CCANNNNNNTGG	1 cut(s)	796
Bsu36I	CCTNAGG	1 cut(s)	954
BsuRI	GGCC	2 cut(s)	597, 961
BtsCI	GGATG	4 cut(s)	493, 506, 666, 927
BtsIMutI	CAGTG	2 cut(s)	316, 796
BtuMI	TCGCGA	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	677, 963
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	2 cut(s)	779, 967
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	6 cut(s)	29, 38, 77, 317, 959, 992
CsiI	ACCWGGT	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	226, 470
CviAII	CATG	5 cut(s)	216, 644, 715, 905, 1004
CviQI	GTAC	2 cut(s)	226, 470
DdeI	CTNAG	4 cut(s)	530, 741, 747, 954
DpnI	GATC	4 cut(s)	365, 522, 855, 978
DpnII	GATC	4 cut(s)	363, 520, 853, 976
DraIII	CACNNNGTG	2 cut(s)	359, 440
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	5 cut(s)	29, 38, 77, 317, 992
Eco57I	CTGAAG	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	954
EcoO109I	RGGNCCY	2 cut(s)	29, 992
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	4 cut(s)	123, 198, 409, 429
FaeI	CATG	5 cut(s)	219, 647, 718, 908, 1007
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	5 cut(s)	215, 643, 714, 904, 1003
FauI	CCCGC	1 cut(s)	680
FauNDI	CATATG	1 cut(s)	633
FblI	GTMKAC	2 cut(s)	12, 280
Fnu4HI	GCNGC	3 cut(s)	131, 628, 780
FokI	GGATG	4 cut(s)	500, 513, 673, 934
Fsp4HI	GCNGC	3 cut(s)	131, 628, 780
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	2 cut(s)	778, 966
GluI	GCNGC	3 cut(s)	131, 628, 780
GsuI	CTGGAG	1 cut(s)	416
HaeII	RGCGCY	1 cut(s)	968
HaeIII	GGCC	2 cut(s)	597, 961
HapII	CCGG	7 cut(s)	107, 134, 467, 513, 601, 658, 968
HhaI	GCGC	2 cut(s)	779, 967
Hin1II	CATG	5 cut(s)	219, 647, 718, 908, 1007
Hin6I	GCGC	2 cut(s)	777, 965
HinP1I	GCGC	2 cut(s)	777, 965
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	70, 422, 532
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	7 cut(s)	107, 134, 467, 513, 601, 658, 968
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	4 cut(s)	13, 281, 307, 940
Hpy188I	TCNGA	3 cut(s)	531, 858, 1021
Hpy188III	TCNNGA	5 cut(s)	46, 67, 536, 649, 905
Hpy8I	GTNNAC	4 cut(s)	13, 281, 307, 940
HpyAV	CCTTC	2 cut(s)	478, 768
HpyCH4III	ACNGT	2 cut(s)	311, 730
HpyCH4IV	ACGT	1 cut(s)	1036
HpyCH4V	TGCA	5 cut(s)	7, 704, 876, 950, 1042
HpyF3I	CTNAG	4 cut(s)	530, 741, 747, 954
HpySE526I	ACGT	1 cut(s)	1036
Hsp92II	CATG	5 cut(s)	219, 647, 718, 908, 1007
HspAI	GCGC	2 cut(s)	777, 965
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	363, 520, 853, 976
Lsp1109I	GCAGC	2 cut(s)	639, 766
LweI	GCATC	1 cut(s)	871
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	1 cut(s)	1036
MaeIII	GTNAC	2 cut(s)	692, 724
MalI	GATC	4 cut(s)	365, 522, 855, 978
MboI	GATC	4 cut(s)	363, 520, 853, 976
MboII	GAAGA	6 cut(s)	152, 466, 626, 664, 826, 839
MluCI	AATT	5 cut(s)	49, 155, 175, 229, 539
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	999
MseI	TTAA	2 cut(s)	306, 1051
MspI	CCGG	7 cut(s)	107, 134, 467, 513, 601, 658, 968
MspR9I	CCNGG	5 cut(s)	125, 200, 411, 431, 467
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	4 cut(s)	125, 200, 411, 431
MvnI	CGCG	1 cut(s)	537
NciI	CCSGG	1 cut(s)	467
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	4 cut(s)	363, 520, 853, 976
NlaIII	CATG	5 cut(s)	219, 647, 718, 908, 1007
NlaIV	GGNNCC	4 cut(s)	129, 204, 960, 993
NruI	TCGCGA	1 cut(s)	537
NspI	RCATGY	2 cut(s)	647, 718
PagI	TCATGA	1 cut(s)	904
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	2 cut(s)	70, 422
PflMI	CCANNNNNTGG	1 cut(s)	1014
PkrI	GCNGC	3 cut(s)	132, 629, 781
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PpuMI	RGGWCCY	2 cut(s)	29, 992
PsiI	TTATAA	1 cut(s)	900
Psp5II	RGGWCCY	2 cut(s)	29, 992
Psp6I	CCWGG	4 cut(s)	123, 198, 409, 429
PspGI	CCWGG	4 cut(s)	123, 198, 409, 429
PspN4I	GGNNCC	4 cut(s)	129, 204, 960, 993
PspPI	GGNCC	6 cut(s)	29, 38, 77, 317, 959, 992
PspPPI	RGGWCCY	2 cut(s)	29, 992
PstI	CTGCAG	1 cut(s)	1044
RruI	TCGCGA	1 cut(s)	537
RsaI	GTAC	2 cut(s)	227, 471
RsaNI	GTAC	2 cut(s)	226, 470
SaqAI	TTAA	2 cut(s)	306, 1051
SatI	GCNGC	3 cut(s)	131, 628, 780
Sau3AI	GATC	4 cut(s)	363, 520, 853, 976
Sau96I	GGNCC	6 cut(s)	29, 38, 77, 317, 959, 992
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	5 cut(s)	125, 200, 411, 431, 467
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	871
SfcI	CTRYAG	2 cut(s)	996, 1040
SinI	GGWCC	5 cut(s)	29, 38, 77, 317, 992
SpeI	ACTAGT	1 cut(s)	818
Sse9I	AATT	5 cut(s)	49, 155, 175, 229, 539
SsiI	CCGC	4 cut(s)	131, 287, 673, 845
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	5 cut(s)	123, 198, 409, 429, 465
TaaI	ACNGT	2 cut(s)	311, 730
TaiI	ACGT	1 cut(s)	1039
TaqI	TCGA	1 cut(s)	169
TaqII	GACCGA	1 cut(s)	969
TasI	AATT	5 cut(s)	49, 155, 175, 229, 539
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	70, 422
Tru1I	TTAA	2 cut(s)	306, 1051
Tru9I	TTAA	2 cut(s)	306, 1051
TscAI	CASTG	2 cut(s)	316, 796
TseI	GCWGC	2 cut(s)	627, 779
TspDTI	ATGAA	3 cut(s)	204, 827, 840
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	316, 796
Van91I	CCANNNNNTGG	1 cut(s)	1014
VpaK11BI	GGWCC	5 cut(s)	29, 38, 77, 317, 992
XapI	RAATTY	3 cut(s)	49, 175, 539
XceI	RCATGY	2 cut(s)	647, 718
XmiI	GTMKAC	2 cut(s)	12, 280
XspI	CTAG	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.