Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006252.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

109213 .. 109575

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006252.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgtctaaaaaccgtaagcagaagccctctcgtaagtggtttgtaactacaagcatgtggctcagtggtgcagaagctttgggaactgatgcagttcctggctttttgcctgctgacaccattgcggaaaagaaaagtgatgaagaattggctgttcctgctgatgaggatcagaaattcagaattcatgcgcgctatgtggagagccttttgatgatttttatggtgatgagacagaggagtggatgtataaaggtgctgtgtacttggatgcacctcatgggtcaacaccagacatggataggtcacaaactcacaattaggtcctattactcctatagtgcatgccaaatgcaggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

120

Amino Acids

13.83

Weight (kDa)

9.27

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	193
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	176, 183
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	357
ApoI	RAATTY	2 cut(s)	176, 183
AspLEI	GCGC	2 cut(s)	193, 195
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	79, 261
BsaBI	GATNNNNATC	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	251, 276
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	76
BsePI	GCGCGC	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	120
BssHII	GCGCGC	1 cut(s)	191
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	14
BstC8I	GCNNGC	4 cut(s)	111, 193, 346, 357
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	251, 276
BstFNI	CGCG	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	193, 195
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	58, 348
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	251, 276
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	4 cut(s)	111, 193, 346, 357
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	2 cut(s)	193, 195
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	5 cut(s)	55, 188, 280, 297, 345
CviJI	RGCY	7 cut(s)	25, 61, 77, 102, 152, 207, 359
CviKI_1	RGCY	7 cut(s)	25, 61, 77, 102, 152, 207, 359
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	97
FaeI	CATG	5 cut(s)	58, 191, 283, 300, 348
FaiI	YATR	9 cut(s)	56, 189, 198, 224, 251, 281, 298, 339, 346
FatI	CATG	5 cut(s)	54, 187, 279, 296, 344
FokI	GGATG	2 cut(s)	258, 283
GlaI	GCGC	2 cut(s)	192, 194
HaeIII	GGCC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	193, 195
Hin1II	CATG	5 cut(s)	58, 191, 283, 300, 348
Hin6I	GCGC	2 cut(s)	191, 193
HinP1I	GCGC	2 cut(s)	191, 193
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	75
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	264, 287
Hpy188I	TCNGA	2 cut(s)	174, 182
Hpy8I	GTNNAC	2 cut(s)	264, 287
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	71, 92, 274, 344, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	58, 191, 283, 300, 348
HspAI	GCGC	2 cut(s)	191, 193
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	84, 111, 123, 171, 305, 341
LweI	GCATC	2 cut(s)	79, 261
MaeIII	GTNAC	2 cut(s)	43, 305
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	4 cut(s)	146, 176, 183, 318
MnlI	CCTC	4 cut(s)	37, 160, 231, 287
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	58, 191, 283, 300, 348
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	2 cut(s)	58, 348
PaeI	GCATGC	1 cut(s)	348
PauI	GCGCGC	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	324
PspPPI	RGGWCCY	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	98
PteI	GCGCGC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	5 cut(s)	79, 258, 279, 307, 326
SfaNI	GCATC	2 cut(s)	79, 261
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	324
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	4 cut(s)	146, 176, 183, 318
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	14
TasI	AATT	4 cut(s)	146, 176, 183, 318
TatI	WGTACW	1 cut(s)	263
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	156, 176
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	2 cut(s)	176, 183
XceI	RCATGY	2 cut(s)	58, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.