Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

159321 .. 159897

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007415.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ctgaaagaggagaaggatgttgtggtaggatgtgagttttccggccttgatctaaatctgcgttgcgaatctgtggtaatcggcttgtatgagggtggtctgccaaggcaatgtaaaagctgtggcctccggttcaagtgtgaagaacagcacatcagccatatggattggcatgtcaagaagaaccggatgtccaaagcccgcatgcagaagccctctcgtaacctttatgcaactacaagcatgtggcttgttactgatgtagaggctgagactgaggcattaccttctggtgtagttttagatgcttttgttgagttttatagtcatgagaaagatgagtggatgtataaaggtgcagtttacttgaatgcgcctcaggggccagcgccggagatggatcggtcacagttgggtcctctagtccatgccaaatgctggtcggagggcagtcggaaacgtctgcggaggacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

7.77

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AciI	CCGC	2 cut(s)	202, 466
AclWI	GGATC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	136, 370
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	3 cut(s)	43, 124, 383
AspLEI	GCGC	2 cut(s)	376, 391
AspS9I	GGNCC	2 cut(s)	383, 416
AvaII	GGWCC	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	378
BccI	CCATC	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	383, 416
BmiI	GGNNCC	2 cut(s)	384, 417
BmsI	GCATC	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	104
BsaWI	WCCGGW	2 cut(s)	129, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	4 cut(s)	22, 35, 195, 351
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	3 cut(s)	261, 267, 392
BseRI	GAGGAG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	3 cut(s)	45, 126, 385
BsiSI	CCGG	4 cut(s)	42, 130, 187, 392
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	45, 126, 385
Bsp143I	GATC	2 cut(s)	49, 400
BspACI	CCGC	2 cut(s)	202, 466
BspANI	GGCC	3 cut(s)	45, 126, 385
BspCNI	CTCAG	3 cut(s)	262, 268, 391
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	384, 417
BspPI	GGATC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	2 cut(s)	49, 400
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	202, 206, 387
BstDEI	CTNAG	3 cut(s)	270, 276, 378
BstF5I	GGATG	4 cut(s)	22, 35, 195, 351
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	376, 391
BstKTI	GATC	2 cut(s)	52, 403
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	2 cut(s)	49, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNSI	RCATGY	3 cut(s)	176, 208, 247
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	45, 126, 385
BtsCI	GGATG	4 cut(s)	22, 35, 195, 351
Cac8I	GCNNGC	3 cut(s)	202, 206, 387
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	2 cut(s)	376, 391
Cfr13I	GGNCC	2 cut(s)	383, 416
CviAII	CATG	5 cut(s)	173, 205, 244, 329, 428
DdeI	CTNAG	3 cut(s)	270, 276, 378
DpnI	GATC	2 cut(s)	51, 402
DpnII	GATC	2 cut(s)	49, 400
Eco130I	CCWWGG	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	416
Eco81I	CCTNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	5 cut(s)	176, 208, 247, 332, 431
FatI	CATG	5 cut(s)	172, 204, 243, 328, 427
FauI	CCCGC	1 cut(s)	209
FauNDI	CATATG	1 cut(s)	162
FokI	GGATG	4 cut(s)	29, 42, 202, 358
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	375, 390
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	45, 126, 385
HapII	CCGG	4 cut(s)	42, 130, 187, 392
HhaI	GCGC	2 cut(s)	376, 391
Hin1II	CATG	5 cut(s)	176, 208, 247, 332, 431
Hin6I	GCGC	2 cut(s)	374, 389
HinP1I	GCGC	2 cut(s)	374, 389
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	4 cut(s)	42, 130, 187, 392
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	445, 456
Hpy188III	TCNNGA	2 cut(s)	178, 329
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	7, 297
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	3 cut(s)	208, 233, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	3 cut(s)	270, 276, 378
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	5 cut(s)	176, 208, 247, 332, 431
HspAI	GCGC	2 cut(s)	374, 389
Kzo9I	GATC	2 cut(s)	49, 400
LpnPI	CCDG	8 cut(s)	55, 143, 200, 276, 365, 399, 405, 424
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	3 cut(s)	221, 253, 405
MalI	GATC	2 cut(s)	51, 402
MboI	GATC	2 cut(s)	49, 400
MboII	GAAGA	2 cut(s)	155, 193
MmeI	TCCRAC	2 cut(s)	423, 434
MnlI	CCTC	9 cut(s)	85, 137, 226, 259, 271, 387, 429, 439, 462
MseI	TTAA	1 cut(s)	475
MspI	CCGG	4 cut(s)	42, 130, 187, 392
Mva1269I	GAATGC	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	2 cut(s)	49, 400
NlaIII	CATG	5 cut(s)	176, 208, 247, 332, 431
NlaIV	GGNNCC	2 cut(s)	384, 417
NmuCI	GTSAC	1 cut(s)	405
NspI	RCATGY	3 cut(s)	176, 208, 247
PaeI	GCATGC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	328
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	384, 417
PspPI	GGNCC	2 cut(s)	383, 416
PspPPI	RGGWCCY	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	475
Sau3AI	GATC	2 cut(s)	49, 400
Sau96I	GGNCC	2 cut(s)	383, 416
SetI	ASST	5 cut(s)	122, 228, 289, 358, 463
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	416
SphI	GCATGC	1 cut(s)	208
SsiI	CCGC	2 cut(s)	202, 466
SspMI	CTAG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	411
TaiI	ACGT	1 cut(s)	463
TaqII	GACCGA	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	405
Tsp45I	GTSAC	1 cut(s)	405
Van91I	CCANNNNNTGG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	416
XceI	RCATGY	3 cut(s)	176, 208, 247
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.