Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

214464 .. 215357

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007415.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgaacctggcaggaggaaacatcaaaatagctgaggagactaattttttcccaaattccaagtcgaagtacctcgaacccaaacttccacttaattatgacaatgccactcatcctcactttagctgcaagctcgcccctcttggcttctccttgtcccaaggctcgccccactcggcatctcctcgcctcaaggctcgcccctctcggcatctcctcgcctcaaggttcgcccctctcggcatctcctcgcctcaaggttcgcccctcttggcatctcccttacaaagtttcacggtagcactactcctaagtgcggctcgtgacacaaggcaatgtaaaagctgtggcctccggttcaagtgtgaagaacagcacagcagccatatggattggcatgtcaagaagaaccagatatccaaaacccgcaagcagaagccctctcgtaacctttatgcaactacaagcgtgtggcttgttactgatgtagaggctgagactgaggcattaccttctggtgtagttttgtgcgctgctgacaccaatggcgtggcggaaaggaaaaggaagactagtgatgaagaaatggttgttcctgcggacgaggatcagagtaaatgtgccttatgcacagatgcttttgttgagttttatagtcatgagaaagatgagtggatgtataaaggtgctgtttacttgaatgtgcctcaagggccagcgccggagatggattggtcacagttgggtcctatagtccatgccaaatgctggtcgggtagtaggaaacgtctgcggaggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

267

Amino Acids

29.66

Weight (kDa)

9.06

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	768
AciI	CCGC	5 cut(s)	317, 427, 554, 599, 793
AclWI	GGATC	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	316, 768
AgsI	TTSAA	2 cut(s)	361, 700
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	6
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	4 cut(s)	32, 126, 133, 345
AluI	AGCT	4 cut(s)	32, 126, 133, 345
Alw26I	GTCTC	2 cut(s)	32, 491
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	2 cut(s)	349, 713
ApeKI	GCWGC	3 cut(s)	126, 381, 533
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspLEI	GCGC	2 cut(s)	533, 721
AspS9I	GGNCC	2 cut(s)	713, 746
AvaII	GGWCC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	575
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	113, 393, 520
BccI	CCATC	1 cut(s)	721
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	32, 491
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	712
BisI	GCNGC	4 cut(s)	127, 318, 382, 534
BlsI	GCNGC	4 cut(s)	128, 319, 383, 535
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	2 cut(s)	713, 746
BmiI	GGNNCC	1 cut(s)	747
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	5 cut(s)	188, 220, 252, 284, 625
BpiI	GAAGAC	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	4 cut(s)	176, 208, 240, 693
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 768
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	112, 681
BseLI	CCNNNNNNNGG	2 cut(s)	316, 768
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	3 cut(s)	24, 486, 492
BseRI	GAGGAG	4 cut(s)	50, 174, 206, 238
BseXI	GCAGC	3 cut(s)	113, 393, 520
BshFI	GGCC	2 cut(s)	351, 715
BsiSI	CCGG	2 cut(s)	355, 722
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	316, 768
BsmAI	GTCTC	2 cut(s)	32, 491
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	351, 715
Bsp143I	GATC	1 cut(s)	607
BspACI	CCGC	5 cut(s)	317, 427, 554, 599, 793
BspANI	GGCC	2 cut(s)	351, 715
BspCNI	CTCAG	3 cut(s)	25, 487, 493
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	747
BspPI	GGATC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	607
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	298, 741
BstC8I	GCNNGC	6 cut(s)	131, 135, 167, 199, 431, 717
BstDEI	CTNAG	4 cut(s)	33, 311, 495, 501
BstF5I	GGATG	2 cut(s)	112, 681
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	2 cut(s)	533, 721
BstKTI	GATC	1 cut(s)	610
BstMAI	GTCTC	2 cut(s)	32, 491
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	1 cut(s)	712
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	3 cut(s)	113, 393, 520
BstV2I	GAAGAC	1 cut(s)	575
BstXI	CCANNNNNNTGG	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	351, 715
BtsCI	GGATG	2 cut(s)	112, 681
Cac8I	GCNNGC	6 cut(s)	131, 135, 167, 199, 431, 717
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	2 cut(s)	533, 721
Cfr13I	GGNCC	2 cut(s)	713, 746
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	3 cut(s)	398, 659, 758
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	33, 311, 495, 501
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
EciI	GGCGGA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	3 cut(s)	401, 662, 761
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	397, 658, 757
FauI	CCCGC	1 cut(s)	434
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	127, 318, 382, 534
FokI	GGATG	2 cut(s)	99, 688
Fsp4HI	GCNGC	4 cut(s)	127, 318, 382, 534
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	2 cut(s)	532, 720
GluI	GCNGC	4 cut(s)	127, 318, 382, 534
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	2 cut(s)	351, 715
HapII	CCGG	2 cut(s)	355, 722
HhaI	GCGC	2 cut(s)	533, 721
Hin1II	CATG	3 cut(s)	401, 662, 761
Hin6I	GCGC	2 cut(s)	531, 719
HinP1I	GCGC	2 cut(s)	531, 719
HpaII	CCGG	2 cut(s)	355, 722
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	3 cut(s)	323, 403, 659
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	2 cut(s)	298, 741
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	3 cut(s)	129, 458, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	712
HpyF3I	CTNAG	4 cut(s)	33, 311, 495, 501
HpySE526I	ACGT	1 cut(s)	787
Hsp92II	CATG	3 cut(s)	401, 662, 761
HspAI	GCGC	2 cut(s)	531, 719
Kzo9I	GATC	1 cut(s)	607
LpnPI	CCDG	8 cut(s)	20, 368, 425, 501, 609, 729, 735, 754
Lsp1109I	GCAGC	3 cut(s)	113, 393, 520
LweI	GCATC	5 cut(s)	188, 220, 252, 284, 625
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	4 cut(s)	323, 446, 478, 735
MalI	GATC	1 cut(s)	609
MboI	GATC	1 cut(s)	607
MboII	GAAGA	4 cut(s)	380, 418, 580, 593
MluCI	AATT	3 cut(s)	43, 55, 94
MseI	TTAA	1 cut(s)	93
MspI	CCGG	2 cut(s)	355, 722
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	712
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	401, 662, 761
NlaIV	GGNNCC	1 cut(s)	747
NmeAIII	GCCGAG	3 cut(s)	155, 187, 219
NmuCI	GTSAC	2 cut(s)	323, 735
NspI	RCATGY	1 cut(s)	401
PagI	TCATGA	1 cut(s)	658
PflMI	CCANNNNNTGG	1 cut(s)	768
PkrI	GCNGC	4 cut(s)	128, 319, 383, 535
PpuMI	RGGWCCY	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	2 cut(s)	713, 746
PspPPI	RGGWCCY	1 cut(s)	746
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	127, 318, 382, 534
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	2 cut(s)	713, 746
ScrFI	CCNGG	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	188, 220, 252, 284, 625
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	4 cut(s)	191, 223, 255, 708
SmoI	CTYRAG	4 cut(s)	191, 223, 255, 708
SpeI	ACTAGT	1 cut(s)	572
Sse9I	AATT	3 cut(s)	43, 55, 94
SsiI	CCGC	5 cut(s)	317, 427, 554, 599, 793
SspMI	CTAG	1 cut(s)	573
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	298, 741
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	2 cut(s)	65, 75
TasI	AATT	3 cut(s)	43, 55, 94
TauI	GCSGC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	323, 735
TseI	GCWGC	3 cut(s)	126, 381, 533
Tsp45I	GTSAC	2 cut(s)	323, 735
TspDTI	ATGAA	2 cut(s)	17, 594
Van91I	CCANNNNNTGG	1 cut(s)	768
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.