Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008397.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

17258 .. 18038

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008397.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggcacaaggtgtgatctcattaaaaaaccaaagcagaggaggacaggagggtgctagttcactaaattatgtacctcttgtaccacaacaaggtggattgcctattcaaaatgttgctgctgatgttccagtagtagttcctgaagagaaggatgctgtggtaggatgtgagttctccggccttgatctaaatctgtgtagcgaatctgtggtaatcggcttgtatgagggtggtctgccaaggcaatgtaaaagctgtgacctttggttcaagtgtgaagaacagcacagcagccatatggattcccatgtcaagaagaaccggatgtccaaaacccgcaagcagaagccctctcgtaacttttatgcaactacaagcatgtggcttgttactgatgtagaggctgaggctgaggcattagcttctggtgtagttttgtgcgctgctgacactaatggcgtggcggaaaagaaaaggaagactagtgatgaagaaatagttgttcctgcggacgaggatcagagtaaatgtgccttatgcacagatgcttttgttgagttttatagtcatgagacagacgagtggatgtataaaggtgttgtttacttgaatgcgcctcaggggccagagcctgagatggatcgatcacagttgggtcctatagtccatgccaaatgctggtcagagggaagtaggaaacgtctgcggaggagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

239

Amino Acids

26.31

Weight (kDa)

5.35

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	681
AciI	CCGC	4 cut(s)	340, 467, 512, 709
AclWI	GGATC	2 cut(s)	528, 651
AcuI	CTGAAG	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	11
AfaI	GTAC	2 cut(s)	75, 84
AfiI	CCNNNNNNNGG	2 cut(s)	92, 681
AgsI	TTSAA	3 cut(s)	110, 274, 613
AhlI	ACTAGT	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	2 cut(s)	258, 425
AluI	AGCT	2 cut(s)	258, 425
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	528, 651
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	181, 626
ApeKI	GCWGC	3 cut(s)	119, 294, 446
AspLEI	GCGC	2 cut(s)	446, 619
AspS9I	GGNCC	2 cut(s)	626, 659
AvaII	GGWCC	1 cut(s)	659
AxyI	CCTNAGG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	488
BbvCI	CCTCAGC	2 cut(s)	408, 414
BbvI	GCAGC	3 cut(s)	106, 306, 433
BccI	CCATC	1 cut(s)	634
BcoDI	GTCTC	1 cut(s)	569
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	57, 486
BfmI	CTRYAG	1 cut(s)	663
BglI	GCCNNNNNGGC	1 cut(s)	625
BisI	GCNGC	3 cut(s)	120, 295, 447
BlsI	GCNGC	3 cut(s)	121, 296, 448
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	2 cut(s)	626, 659
BmiI	GGNNCC	2 cut(s)	627, 660
BmsI	GCATC	2 cut(s)	145, 538
BpiI	GAAGAC	1 cut(s)	488
Bpu10I	CCTNAGC	2 cut(s)	408, 414
Bsa29I	ATCGAT	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 681
Bse1I	ACTGG	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	621
Bse3DI	GCAATG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	4 cut(s)	160, 173, 333, 594
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	92, 681
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	4 cut(s)	399, 405, 627, 635
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	106, 306, 433
BshFI	GGCC	2 cut(s)	183, 628
BshVI	ATCGAT	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	180, 325
BslI	CCNNNNNNNGG	2 cut(s)	92, 681
BsmAI	GTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	2 cut(s)	183, 628
Bsp143I	GATC	5 cut(s)	15, 187, 520, 643, 647
BspACI	CCGC	4 cut(s)	340, 467, 512, 709
BspANI	GGCC	2 cut(s)	183, 628
BspCNI	CTCAG	4 cut(s)	400, 406, 628, 634
BspDI	ATCGAT	1 cut(s)	646
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	627, 660
BspPI	GGATC	2 cut(s)	528, 651
BsrDI	GCAATG	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	5 cut(s)	15, 187, 520, 643, 647
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	654
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	408, 414, 621, 636
BstF5I	GGATG	4 cut(s)	160, 173, 333, 594
BstHHI	GCGC	2 cut(s)	446, 619
BstKTI	GATC	5 cut(s)	18, 190, 523, 646, 650
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	5 cut(s)	15, 187, 520, 643, 647
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNSI	RCATGY	1 cut(s)	385
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	106, 306, 433
BstV2I	GAAGAC	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	183, 628
BsuTUI	ATCGAT	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	160, 173, 333, 594
Cac8I	GCNNGC	1 cut(s)	344
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	2 cut(s)	446, 619
Cfr13I	GGNCC	2 cut(s)	626, 659
ClaI	ATCGAT	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	74, 83
CviAII	CATG	4 cut(s)	311, 382, 572, 671
CviQI	GTAC	2 cut(s)	74, 83
DdeI	CTNAG	4 cut(s)	408, 414, 621, 636
DpnI	GATC	5 cut(s)	17, 189, 522, 645, 649
DpnII	GATC	5 cut(s)	15, 187, 520, 643, 647
DraIII	CACNNNGTG	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	4 cut(s)	314, 385, 575, 674
FatI	CATG	4 cut(s)	310, 381, 571, 670
FauI	CCCGC	1 cut(s)	347
FauNDI	CATATG	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	120, 295, 447
FokI	GGATG	4 cut(s)	167, 180, 340, 601
Fsp4HI	GCNGC	3 cut(s)	120, 295, 447
FspBI	CTAG	2 cut(s)	57, 486
GlaI	GCGC	2 cut(s)	445, 618
GluI	GCNGC	3 cut(s)	120, 295, 447
HaeIII	GGCC	2 cut(s)	183, 628
HapII	CCGG	2 cut(s)	180, 325
HhaI	GCGC	2 cut(s)	446, 619
Hin1II	CATG	4 cut(s)	314, 385, 575, 674
Hin6I	GCGC	2 cut(s)	444, 617
HinP1I	GCGC	2 cut(s)	444, 617
HinfI	GANTC	2 cut(s)	206, 305
HpaII	CCGG	2 cut(s)	180, 325
Hpy166II	GTNNAC	2 cut(s)	62, 607
Hpy188I	TCNGA	2 cut(s)	525, 688
Hpy188III	TCNNGA	3 cut(s)	143, 316, 572
Hpy8I	GTNNAC	2 cut(s)	62, 607
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	654
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	2 cut(s)	371, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	4 cut(s)	408, 414, 621, 636
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	4 cut(s)	314, 385, 575, 674
HspAI	GCGC	2 cut(s)	444, 617
Kzo9I	GATC	5 cut(s)	15, 187, 520, 643, 647
Lsp1109I	GCAGC	3 cut(s)	106, 306, 433
LweI	GCATC	2 cut(s)	145, 538
MaeI	CTAG	2 cut(s)	57, 486
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	3 cut(s)	260, 359, 391
MalI	GATC	5 cut(s)	17, 189, 522, 645, 649
MboI	GATC	5 cut(s)	15, 187, 520, 643, 647
MboII	GAAGA	5 cut(s)	158, 293, 331, 493, 506
MluCI	AATT	1 cut(s)	67
MseI	TTAA	1 cut(s)	23
MspI	CCGG	2 cut(s)	180, 325
Mva1269I	GAATGC	1 cut(s)	619
MwoI	GCNNNNNNNGC	1 cut(s)	625
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	5 cut(s)	15, 187, 520, 643, 647
NlaIII	CATG	4 cut(s)	314, 385, 575, 674
NlaIV	GGNNCC	2 cut(s)	627, 660
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	385
PagI	TCATGA	1 cut(s)	571
PctI	GAATGC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	206, 305
PflMI	CCANNNNNTGG	1 cut(s)	681
PkrI	GCNGC	3 cut(s)	121, 296, 448
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
PspN4I	GGNNCC	2 cut(s)	627, 660
PspPI	GGNCC	2 cut(s)	626, 659
PspPPI	RGGWCCY	1 cut(s)	659
PstNI	CAGNNNCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	75, 84
RsaNI	GTAC	2 cut(s)	74, 83
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	120, 295, 447
Sau3AI	GATC	5 cut(s)	15, 187, 520, 643, 647
Sau96I	GGNCC	2 cut(s)	626, 659
SetI	ASST	8 cut(s)	13, 79, 97, 260, 267, 427, 601, 706
SfaNI	GCATC	2 cut(s)	145, 538
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	1 cut(s)	659
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	4 cut(s)	340, 467, 512, 709
SspMI	CTAG	2 cut(s)	57, 486
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	654
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	646
TasI	AATT	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	206, 305
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	3 cut(s)	119, 294, 446
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	659
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	2 cut(s)	57, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.