Rh2CG250300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002450
Physical Location & Seq
Reverse (-)
26496462 .. 26496809
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG250300.1

Sequence Viewer

Length: 348 bp
ATGTTATACCACCTTATTCATCTGGTGGGTACAATTTTCAAGGGCAGGCTAGGTGGTACTAGTTCAGCAAATTGTGTCCCTCATCGTCTACCATCGCAAGGCGTAACTCCGGTTAAAAATGCTGGTCCACTAGTCGCTGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTCATTGAAAAACCAAAGCAGAGGAGGACAGGAGGGTGCTAGTTCACTAAATTTTGTACCTATTGTACCACAGCAAGTTGGATTGCCCGTTCAAAATGCTGCTGCTGATGTTCCAGTAGTAGTTCCTGGTTTAATTGATTCTCTCCTGGCACAGGGAGTCATTTCGTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

11.71

Weight (kDa)

9.86

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 223
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 4 cut(s) 31, 58, 231, 240
AfiI CCNNNNNNNGG 2 cut(s) 98, 325
AgsI TTSAA 4 cut(s) 40, 181, 266, 343
AhlI ACTAGT 2 cut(s) 59, 130
AjnI CCWGG 2 cut(s) 298, 318
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
Alw26I GTCTC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 272, 275
ApoI RAATTY 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 259, 262
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 2 cut(s) 300, 320
BcoDI GTCTC 1 cut(s) 156
BcuI ACTAGT 2 cut(s) 59, 130
BfaI CTAG 4 cut(s) 50, 60, 131, 213
BisI GCNGC 2 cut(s) 273, 276
BlsI GCNGC 2 cut(s) 274, 277
Bme1390I CCNGG 2 cut(s) 300, 320
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 300, 320
BsaI GGTCTC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 325
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 300, 320
BseLI CCNNNNNNNGG 2 cut(s) 98, 325
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 259, 262
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 2 cut(s) 98, 325
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 287
BssMI GATC 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 300, 320
BstC8I GCNNGC 1 cut(s) 47
BstENI CCTNNNNNAGG 1 cut(s) 323
BstKTI GATC 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 171
BstNI CCWGG 2 cut(s) 300, 320
BstSCI CCNGG 2 cut(s) 298, 318
BstV1I GCAGC 2 cut(s) 259, 262
BtgZI GCGATG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 4 cut(s) 30, 57, 230, 239
CviJI RGCY 1 cut(s) 49
CviKI_1 RGCY 1 cut(s) 49
CviQI GTAC 4 cut(s) 30, 57, 230, 239
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
DraIII CACNNNGTG 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 298, 318
FaiI YATR 1 cut(s) 7
FaqI GGGAC 1 cut(s) 62
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 273, 276
Fsp4HI GCNGC 2 cut(s) 273, 276
FspBI CTAG 4 cut(s) 50, 60, 131, 213
GluI GCNGC 2 cut(s) 273, 276
HapII CCGG 1 cut(s) 110
HinfI GANTC 2 cut(s) 311, 330
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 3 cut(s) 89, 128, 218
Hpy8I GTNNAC 3 cut(s) 89, 128, 218
Kzo9I GATC 1 cut(s) 171
Lsp1109I GCAGC 2 cut(s) 259, 262
MaeI CTAG 4 cut(s) 50, 60, 131, 213
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MluCI AATT 4 cut(s) 33, 70, 223, 306
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 4 cut(s) 90, 188, 191, 199
MseI TTAA 2 cut(s) 114, 305
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 2 cut(s) 300, 320
MvaI CCWGG 2 cut(s) 300, 320
NdeII GATC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 274, 277
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 298, 318
PspGI CCWGG 2 cut(s) 298, 318
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 4 cut(s) 31, 58, 231, 240
RsaNI GTAC 4 cut(s) 30, 57, 230, 239
SaqAI TTAA 2 cut(s) 114, 305
SatI GCNGC 2 cut(s) 273, 276
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 300, 320
SetI ASST 4 cut(s) 15, 55, 169, 235
SinI GGWCC 1 cut(s) 125
SpeI ACTAGT 2 cut(s) 59, 130
Sse9I AATT 4 cut(s) 33, 70, 223, 306
SspMI CTAG 4 cut(s) 50, 60, 131, 213
StyD4I CCNGG 2 cut(s) 298, 318
TasI AATT 4 cut(s) 33, 70, 223, 306
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 114, 305
Tru9I TTAA 2 cut(s) 114, 305
TseI GCWGC 2 cut(s) 272, 275
TspDTI ATGAA 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 125
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 4 cut(s) 50, 60, 131, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.