Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010543.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

43332 .. 43980

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010543.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcacaaggtatgatctcattgaaaaaccaaagcagaggaggactggagggtactagttcactaaattctgtacctcttgtaccacagcaaggggcattgcctgttcaaaatgctgttgctgatgttccattggtagttcctggtttgattgattctctcctggcacaaagcgaatctgtggtaatcggtttgtatgagggtggtctgccaaggcaatgtaaaagctgtggcctccggttcaagtgtgaagaacagcacagcagccatatggattggcatgtcaagaagaaccggatgtccaaaacccacaagcagaagccctctcgtaacttttatgcaactaaaagcatgtggcttgttacagatgtagaggctgaggctaaggcattaccttctagtgtagttttgtgcgctgctgacaccagtggcgtggcagaaaagaaaaggaagactagtgataaagaaatggttgttcctgcggacgaggatcaaagtaaatgttccttatgcagagatgcttttgttgagtttagggctttattaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

183

Amino Acids

19.97

Weight (kDa)

8.74

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	3 cut(s)	55, 75, 84
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	25, 110, 244
AhlI	ACTAGT	2 cut(s)	56, 455
AjnI	CCWGG	2 cut(s)	142, 162
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
AlwI	GGATC	1 cut(s)	498
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	264, 416
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	458
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	276, 403
BciT130I	CCWGG	2 cut(s)	144, 164
BcuI	ACTAGT	2 cut(s)	56, 455
BfaI	CTAG	3 cut(s)	57, 399, 456
BisI	GCNGC	2 cut(s)	265, 417
BlsI	GCNGC	2 cut(s)	266, 418
Bme1390I	CCNGG	2 cut(s)	144, 164
BmrFI	CCNGG	2 cut(s)	144, 164
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	2 cut(s)	378, 384
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	2 cut(s)	237, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	51, 426
Bse3DI	GCAATG	2 cut(s)	98, 224
BseBI	CCWGG	2 cut(s)	144, 164
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	2 cut(s)	98, 224
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	51, 426
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	276, 403
BshFI	GGCC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	238, 295
BslI	CCNNNNNNNGG	1 cut(s)	92
BsnI	GGCC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	15, 490
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	370
BspPI	GGATC	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	98, 224
BsrI	ACTGG	2 cut(s)	51, 426
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	15, 490
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	144, 164
BstDEI	CTNAG	2 cut(s)	378, 384
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	18, 493
BstMBI	GATC	2 cut(s)	15, 490
BstNI	CCWGG	2 cut(s)	144, 164
BstNSI	RCATGY	2 cut(s)	284, 355
BstSCI	CCNGG	2 cut(s)	142, 162
BstV1I	GCAGC	2 cut(s)	276, 403
BstV2I	GAAGAC	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	433
CfoI	GCGC	1 cut(s)	416
Csp6I	GTAC	3 cut(s)	54, 74, 83
CviAII	CATG	2 cut(s)	281, 352
CviJI	RGCY	8 cut(s)	228, 234, 267, 322, 358, 377, 383, 539
CviKI_1	RGCY	8 cut(s)	228, 234, 267, 322, 358, 377, 383, 539
CviQI	GTAC	3 cut(s)	54, 74, 83
DdeI	CTNAG	2 cut(s)	378, 384
DpnI	GATC	2 cut(s)	17, 492
DpnII	GATC	2 cut(s)	15, 490
Eco130I	CCWWGG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	142, 162
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	284, 355
FaiI	YATR	8 cut(s)	14, 198, 270, 272, 282, 339, 353, 511
FatI	CATG	2 cut(s)	280, 351
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	265, 417
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	265, 417
FspBI	CTAG	3 cut(s)	57, 399, 456
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	2 cut(s)	265, 417
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	2 cut(s)	238, 295
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	284, 355
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	2 cut(s)	155, 176
HpaII	CCGG	2 cut(s)	238, 295
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	341, 513
HpyF3I	CTNAG	2 cut(s)	378, 384
Hsp92II	CATG	2 cut(s)	284, 355
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	15, 490
Lsp1109I	GCAGC	2 cut(s)	276, 403
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	3 cut(s)	57, 399, 456
MaeIII	GTNAC	2 cut(s)	329, 361
MalI	GATC	2 cut(s)	17, 492
MboI	GATC	2 cut(s)	15, 490
MboII	GAAGA	3 cut(s)	263, 301, 463
MluCI	AATT	1 cut(s)	67
MseI	TTAA	1 cut(s)	545
MspI	CCGG	2 cut(s)	238, 295
MspR9I	CCNGG	2 cut(s)	144, 164
MvaI	CCWGG	2 cut(s)	144, 164
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	2 cut(s)	15, 490
NlaIII	CATG	2 cut(s)	284, 355
NspI	RCATGY	2 cut(s)	284, 355
PfeI	GAWTC	2 cut(s)	155, 176
PkrI	GCNGC	2 cut(s)	266, 418
Psp6I	CCWGG	2 cut(s)	142, 162
PspGI	CCWGG	2 cut(s)	142, 162
RsaI	GTAC	3 cut(s)	55, 75, 84
RsaNI	GTAC	3 cut(s)	54, 74, 83
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	2 cut(s)	265, 417
Sau3AI	GATC	2 cut(s)	15, 490
ScrFI	CCNGG	2 cut(s)	144, 164
SetI	ASST	5 cut(s)	13, 79, 230, 397, 551
SfaNI	GCATC	1 cut(s)	508
SpeI	ACTAGT	2 cut(s)	56, 455
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	3 cut(s)	57, 399, 456
StyD4I	CCNGG	2 cut(s)	142, 162
StyI	CCWWGG	1 cut(s)	212
TasI	AATT	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	155, 176
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	2 cut(s)	264, 416
TspRI	CASTG	1 cut(s)	433
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	2 cut(s)	284, 355
XspI	CTAG	3 cut(s)	57, 399, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.