Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

17530307 .. 17530468

Gene Structure 162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGTGACATCGTTGGAGGGGTTTGTATGCATGTTGCTTCTGCTTCTTCACCGATTGAAATCGAAGCCTTGGCTGCTAGAGCAGCTTGTGCTTTGGCTGTGCAATTTCAGCTTGCTCCTATCAGTTTTGAAAGGGATTGTTTGCAGGTCATTCAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

53

Amino Acids

6.15

Weight (kDa)

9.42

Isoelectric Point (pI)

18.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	58, 130, 154
AluBI	AGCT	3 cut(s)	85, 111, 157
AluI	AGCT	3 cut(s)	85, 111, 157
ApeKI	GCWGC	2 cut(s)	73, 82
AsuHPI	GGTGA	2 cut(s)	16, 41
BbvI	GCAGC	2 cut(s)	60, 94
BfaI	CTAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	74, 83
BlsI	GCNGC	2 cut(s)	75, 84
BsaBI	GATNNNNATC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	60, 94
BspMI	ACCTGC	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 79, 82, 88, 108
BstNSI	RCATGY	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	60, 94
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	113
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	6 cut(s)	67, 73, 85, 97, 111, 157
CviKI_1	RGCY	6 cut(s)	67, 73, 85, 97, 111, 157
Eco130I	CCWWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	34
FaiI	YATR	3 cut(s)	28, 32, 160
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	74, 83
Fsp4HI	GCNGC	2 cut(s)	74, 83
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	2 cut(s)	74, 83
Hin1II	CATG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	16, 41
HpyCH4V	TGCA	3 cut(s)	30, 102, 144
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 79, 82, 88, 108
Hsp92II	CATG	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	60, 94
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	38
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	1 cut(s)	10
Mph1103I	ATGCAT	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	73, 79, 82, 88, 108
NlaIII	CATG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	75, 84
SatI	GCNGC	2 cut(s)	74, 83
SetI	ASST	4 cut(s)	87, 113, 149, 159
SgeI	CNNG	6 cut(s)	43, 81, 89, 98, 124, 157
Sse9I	AATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	68
TaqI	TCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	73, 82
Tsp45I	GTSAC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.