Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

50993 .. 52092

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000431.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggaccaatcaagaattctatgggttctgtcaagaatcaaggtccatccccaatttcttccacctcgaccaaatttctacccatctccacaaaccctggtgccaccttattcatgtggtgggtacaattttcaagggcagggtggttctacttcagcaagttctgtccctcatcgtctaccaccgcaaggcgtatctccggttaatagtgctggtccagtagtctctggtttgcttgggtcgctaatggcacaaggtgtgatctcattgaaaaatcaaagcagaggaggactggagggtactggttcactaaattatgtacctcttgtaccacagcaaggggcattgcctgttcaaaatgctgctgctgatgttccagtagtagttcctggtttgattgattctttcctggcacaaggtgtcatttcgttgaagaaacaaagcccggtactaaaagaggagaaggatgctgtggtaggatgtgagttttccggccttgatctaaatctgagtcgcgtatctgtggtaatcggcttgtatgagggtggtctgcctagtcaatgtaaaagctgtggcctcccgttcaagtgtgaagaacagcacagcagccatatggattggcatgttaagaagaaccggatgtccaaaacccgcaagcagaagccctctcgtaacttttatgcaactacaagcatgtggcttgtcactgatgtagaggctgaggctgaggcattaccttctggtgtagttttgtgccttgctgacaccagtggcgtggcagaaaataaaaggaagactagtgatgaagaaatggttgttcctgcggacgaggatcagagtaaatgtgccttatgcacagatgcttttgttgagttttatagtcatgagacagatgagtggatgtataaaggtgctgtttacttgaatgcacctcaggggccagcgccggagatggatcggtcaaagttgggtcctatagtccatgccaaatgctggtcggagggtagtaggaaacgtctgcagaggacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

343

Amino Acids

37.14

Weight (kDa)

7.56

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	993
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	185, 652, 824
AclWI	GGATC	2 cut(s)	840, 963
AcsI	RAATTY	2 cut(s)	15, 73
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	2 cut(s)	257, 419
AfaI	GTAC	5 cut(s)	125, 301, 321, 330, 450
AfiI	CCNNNNNNNGG	3 cut(s)	188, 338, 993
AgsI	TTSAA	6 cut(s)	134, 271, 356, 433, 586, 925
AhlI	ACTAGT	1 cut(s)	797
AjnI	CCWGG	3 cut(s)	96, 388, 408
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AloI	GAACNNNNNNTCC	2 cut(s)	626, 658
AluBI	AGCT	1 cut(s)	570
AluI	AGCT	1 cut(s)	570
Alw26I	GTCTC	2 cut(s)	229, 881
AlwI	GGATC	2 cut(s)	840, 963
AoxI	GGCC	3 cut(s)	493, 574, 938
ApeKI	GCWGC	3 cut(s)	362, 365, 606
ApoI	RAATTY	2 cut(s)	15, 73
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
AsuC2I	CCSGG	1 cut(s)	446
AvaII	GGWCC	4 cut(s)	4, 43, 215, 971
AxyI	CCTNAGG	1 cut(s)	933
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	800
BbvCI	CCTCAGC	2 cut(s)	720, 726
BbvI	GCAGC	3 cut(s)	349, 352, 618
BccI	CCATC	3 cut(s)	54, 91, 946
BciT130I	CCWGG	3 cut(s)	98, 390, 410
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	229, 881
BcuI	ACTAGT	1 cut(s)	797
BfaI	CTAG	2 cut(s)	555, 798
BfmI	CTRYAG	2 cut(s)	975, 1019
BfoI	RGCGCY	1 cut(s)	947
BisI	GCNGC	3 cut(s)	363, 366, 607
BlsI	GCNGC	3 cut(s)	364, 367, 608
Bme1390I	CCNGG	4 cut(s)	98, 390, 410, 446
Bme18I	GGWCC	4 cut(s)	4, 43, 215, 971
BmgT120I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
BmiI	GGNNCC	3 cut(s)	102, 939, 972
BmrFI	CCNGG	4 cut(s)	98, 390, 410, 446
BmsI	GCATC	2 cut(s)	457, 850
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	2 cut(s)	720, 726
BpuMI	CCSGG	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	2 cut(s)	199, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 338, 993
Bse1I	ACTGG	5 cut(s)	218, 297, 307, 377, 768
Bse21I	CCTNAGG	1 cut(s)	933
Bse3DI	GCAATG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	3 cut(s)	98, 390, 410
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	5 cut(s)	46, 472, 485, 645, 906
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	188, 338, 993
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	4 cut(s)	500, 711, 717, 947
BseNI	ACTGG	5 cut(s)	218, 297, 307, 377, 768
BseRI	GAGGAG	2 cut(s)	300, 473
BseXI	GCAGC	3 cut(s)	349, 352, 618
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	3 cut(s)	495, 576, 940
BshNI	GGYRCC	1 cut(s)	100
BsiSI	CCGG	5 cut(s)	200, 446, 492, 637, 947
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	188, 338, 993
BsmAI	GTCTC	2 cut(s)	229, 881
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	3 cut(s)	495, 576, 940
Bsp143I	GATC	4 cut(s)	261, 499, 832, 955
BspACI	CCGC	3 cut(s)	185, 652, 824
BspANI	GGCC	3 cut(s)	495, 576, 940
BspCNI	CTCAG	4 cut(s)	501, 712, 718, 946
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	883
BspLI	GGNNCC	3 cut(s)	102, 939, 972
BspMAI	CTGCAG	1 cut(s)	1023
BspPI	GGATC	2 cut(s)	840, 963
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	5 cut(s)	218, 297, 307, 377, 768
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	4 cut(s)	261, 499, 832, 955
Bst2UI	CCWGG	3 cut(s)	98, 390, 410
BstC8I	GCNNGC	2 cut(s)	656, 942
BstDEI	CTNAG	4 cut(s)	509, 720, 726, 933
BstF5I	GGATG	5 cut(s)	46, 472, 485, 645, 906
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	4 cut(s)	264, 502, 835, 958
BstMAI	GTCTC	2 cut(s)	229, 881
BstMBI	GATC	4 cut(s)	261, 499, 832, 955
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstNI	CCWGG	3 cut(s)	98, 390, 410
BstNSI	RCATGY	2 cut(s)	626, 697
BstSCI	CCNGG	4 cut(s)	96, 388, 408, 444
BstSFI	CTRYAG	2 cut(s)	975, 1019
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	349, 352, 618
BstV2I	GAAGAC	1 cut(s)	800
BstXI	CCANNNNNNTGG	1 cut(s)	775
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	3 cut(s)	495, 576, 940
BtsCI	GGATG	5 cut(s)	46, 472, 485, 645, 906
BtsIMutI	CAGTG	2 cut(s)	705, 775
Cac8I	GCNNGC	2 cut(s)	656, 942
CciI	TCATGA	1 cut(s)	883
CfoI	GCGC	1 cut(s)	946
Cfr13I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
Csp6I	GTAC	5 cut(s)	124, 300, 320, 329, 449
CviAII	CATG	5 cut(s)	114, 623, 694, 884, 983
CviQI	GTAC	5 cut(s)	124, 300, 320, 329, 449
DdeI	CTNAG	4 cut(s)	509, 720, 726, 933
DpnI	GATC	4 cut(s)	263, 501, 834, 957
DpnII	GATC	4 cut(s)	261, 499, 832, 955
DraIII	CACNNNGTG	2 cut(s)	257, 419
Eco47I	GGWCC	4 cut(s)	4, 43, 215, 971
Eco57I	CTGAAG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	933
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	96, 388, 408
FaeI	CATG	5 cut(s)	117, 626, 697, 887, 986
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	113, 622, 693, 883, 982
FauI	CCCGC	1 cut(s)	659
FauNDI	CATATG	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	363, 366, 607
FokI	GGATG	5 cut(s)	33, 479, 492, 652, 913
Fsp4HI	GCNGC	3 cut(s)	363, 366, 607
FspBI	CTAG	2 cut(s)	555, 798
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	3 cut(s)	363, 366, 607
GsuI	CTGGAG	1 cut(s)	314
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	3 cut(s)	495, 576, 940
HapII	CCGG	5 cut(s)	200, 446, 492, 637, 947
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	5 cut(s)	117, 626, 697, 887, 986
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HinfI	GANTC	3 cut(s)	36, 401, 511
HpaII	CCGG	5 cut(s)	200, 446, 492, 637, 947
Hpy166II	GTNNAC	3 cut(s)	179, 308, 919
Hpy188I	TCNGA	3 cut(s)	510, 837, 1000
Hpy188III	TCNNGA	3 cut(s)	12, 33, 884
Hpy8I	GTNNAC	3 cut(s)	179, 308, 919
HpyAV	CCTTC	2 cut(s)	457, 747
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	4 cut(s)	683, 855, 929, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	4 cut(s)	509, 720, 726, 933
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	5 cut(s)	117, 626, 697, 887, 986
HspAI	GCGC	1 cut(s)	944
Kzo9I	GATC	4 cut(s)	261, 499, 832, 955
Lsp1109I	GCAGC	3 cut(s)	349, 352, 618
LweI	GCATC	2 cut(s)	457, 850
MaeI	CTAG	2 cut(s)	555, 798
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	2 cut(s)	671, 703
MalI	GATC	4 cut(s)	263, 501, 834, 957
MboI	GATC	4 cut(s)	261, 499, 832, 955
MboII	GAAGA	6 cut(s)	50, 445, 605, 643, 805, 818
MluCI	AATT	5 cut(s)	15, 53, 73, 127, 313
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	1 cut(s)	978
MseI	TTAA	3 cut(s)	204, 627, 1030
MspI	CCGG	5 cut(s)	200, 446, 492, 637, 947
MspR9I	CCNGG	4 cut(s)	98, 390, 410, 446
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	3 cut(s)	98, 390, 410
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	446
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	4 cut(s)	261, 499, 832, 955
NlaIII	CATG	5 cut(s)	117, 626, 697, 887, 986
NlaIV	GGNNCC	3 cut(s)	102, 939, 972
NmuCI	GTSAC	1 cut(s)	703
NspI	RCATGY	2 cut(s)	626, 697
PagI	TCATGA	1 cut(s)	883
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	2 cut(s)	36, 401
PflMI	CCANNNNNTGG	1 cut(s)	993
PkrI	GCNGC	3 cut(s)	364, 367, 608
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PpuMI	RGGWCCY	1 cut(s)	971
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	3 cut(s)	96, 388, 408
PspGI	CCWGG	3 cut(s)	96, 388, 408
PspN4I	GGNNCC	3 cut(s)	102, 939, 972
PspPI	GGNCC	5 cut(s)	4, 43, 215, 938, 971
PspPPI	RGGWCCY	1 cut(s)	971
PstI	CTGCAG	1 cut(s)	1023
RsaI	GTAC	5 cut(s)	125, 301, 321, 330, 450
RsaNI	GTAC	5 cut(s)	124, 300, 320, 329, 449
SaqAI	TTAA	3 cut(s)	204, 627, 1030
SatI	GCNGC	3 cut(s)	363, 366, 607
Sau3AI	GATC	4 cut(s)	261, 499, 832, 955
Sau96I	GGNCC	5 cut(s)	4, 43, 215, 938, 971
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	4 cut(s)	98, 390, 410, 446
SfaNI	GCATC	2 cut(s)	457, 850
SfcI	CTRYAG	2 cut(s)	975, 1019
SinI	GGWCC	4 cut(s)	4, 43, 215, 971
SpeI	ACTAGT	1 cut(s)	797
Sse9I	AATT	5 cut(s)	15, 53, 73, 127, 313
SsiI	CCGC	3 cut(s)	185, 652, 824
SspMI	CTAG	2 cut(s)	555, 798
StyD4I	CCNGG	4 cut(s)	96, 388, 408, 444
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	1 cut(s)	67
TaqII	GACCGA	1 cut(s)	948
TasI	AATT	5 cut(s)	15, 53, 73, 127, 313
TfiI	GAWTC	2 cut(s)	36, 401
Tru1I	TTAA	3 cut(s)	204, 627, 1030
Tru9I	TTAA	3 cut(s)	204, 627, 1030
TscAI	CASTG	2 cut(s)	712, 775
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	3 cut(s)	362, 365, 606
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	2 cut(s)	102, 819
TspRI	CASTG	2 cut(s)	712, 775
Van91I	CCANNNNNTGG	1 cut(s)	993
VpaK11BI	GGWCC	4 cut(s)	4, 43, 215, 971
XapI	RAATTY	2 cut(s)	15, 73
XceI	RCATGY	2 cut(s)	626, 697
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	2 cut(s)	555, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.