Rroxscaffold_2G00130060

pcf11p-similar protein 4

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
66167964 .. 66169091
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130060.1

Sequence Viewer

Length: 1128 bp
ATGATGCAAGTCTATGGAGACCAGAGAGGTCCTTATGGTCCAATGAAGAATTCTATGGGTCCTGTCAAGAATCCATGTAAGCCACGCTATATGCCTTTTCCGGCTAATCACCGGAACCGGGTGCCGCCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAACTTCTGCCCATCTCCACAAACCCCAGTACCACCTTATTCATCTGGTGGGTACAATTTTCAGGGGCAGGGTGGTTCTACTTCAGCAAGTTCTGTCCCTCATCGTCTACCGCCACAATGCGTAACTCCGGTTAACAGTGTTGGTCCAGTAGTCTCCGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGGTCTCATTGAAAAATCAAAGCAGAGGAGGACTGGAGGGTACCAGTTCACTAAATTATGTACCTCTTGTGCCACAGCGAGGCGCATTTCCTGTTCAAAATGCTGCTGCTGATGTTCCAGTAGTACTTCCTGGTTTAATTGATTCTCTCCTGGCACAAGGTGTGATTTCGTTGAAGAAACAAAGCCCAGCACTGAAAGAGGAGAAGGATGTTGTGGTAGGATGTGAGTTTTCCGGCCTTGATCTAAATCTGCGTTGCGAATATGTGGTAATCGGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAGAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGTATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACTTTTATGCAACTACAAGCATGTGGCTTGTTACAGATGTAGAGGCTGAGGCTGAGGCATTACCTTCTGGTGTAGTTTTGTGCGCTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCACAGATGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGCGCTGTTTACTTGAATGCGCCTCAGGGGCCAGAGCCAGAGATGGATCGGTCACCGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTTCGGAGGACTTAA

Protein Analysis

375

Amino Acids

41.03

Weight (kDa)

8.83

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_PCFS4 PF23228 300 - 366 1.1e-27 PCFS4 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 2 cut(s) 121, 395
AccB7I CCANNNNNTGG 1 cut(s) 1089
AccI GTMKAC 1 cut(s) 274
AciI CCGC 5 cut(s) 125, 278, 748, 875, 920
AclWI GGATC 2 cut(s) 936, 1059
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 234
AdeI CACNNNGTG 2 cut(s) 353, 515
AfaI GTAC 5 cut(s) 198, 221, 397, 417, 480
AfiI CCNNNNNNNGG 4 cut(s) 118, 131, 434, 1089
AgsI TTSAA 5 cut(s) 367, 452, 529, 682, 1021
AhlI ACTAGT 1 cut(s) 893
AjnI CCWGG 2 cut(s) 484, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AloI GAACNNNNNNTCC 2 cut(s) 722, 754
AluBI AGCT 1 cut(s) 666
AluI AGCT 1 cut(s) 666
Alw26I GTCTC 4 cut(s) 12, 325, 342, 364
AlwI GGATC 2 cut(s) 936, 1059
AoxI GGCC 3 cut(s) 589, 670, 1034
ApeKI GCWGC 4 cut(s) 458, 461, 702, 854
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 395
AspLEI GCGC 4 cut(s) 440, 854, 1010, 1027
AspS9I GGNCC 6 cut(s) 29, 38, 59, 311, 1034, 1067
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 101, 1050
AvaII GGWCC 5 cut(s) 29, 38, 59, 311, 1067
AxyI CCTNAGG 1 cut(s) 1029
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BanI GGYRCC 2 cut(s) 121, 395
BbsI GAAGAC 2 cut(s) 896, 1106
BbvCI CCTCAGC 2 cut(s) 816, 822
BbvI GCAGC 4 cut(s) 445, 448, 714, 841
BccI CCATC 2 cut(s) 187, 1042
BciT130I CCWGG 2 cut(s) 486, 506
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 4 cut(s) 12, 325, 342, 364
BcuI ACTAGT 1 cut(s) 893
BfaI CTAG 1 cut(s) 894
BfmI CTRYAG 1 cut(s) 1071
BfoI RGCGCY 1 cut(s) 1011
BglI GCCNNNNNGGC 1 cut(s) 1033
BisI GCNGC 5 cut(s) 125, 459, 462, 703, 855
BlsI GCNGC 5 cut(s) 126, 460, 463, 704, 856
BmcAI AGTACT 1 cut(s) 480
Bme1390I CCNGG 3 cut(s) 119, 486, 506
Bme18I GGWCC 5 cut(s) 29, 38, 59, 311, 1067
BmgT120I GGNCC 6 cut(s) 29, 38, 59, 311, 1034, 1067
BmiI GGNNCC 6 cut(s) 60, 116, 123, 397, 1035, 1068
BmrFI CCNGG 3 cut(s) 119, 486, 506
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 946
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 2 cut(s) 896, 1106
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 2 cut(s) 816, 822
BpuMI CCSGG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 600
BsaI GGTCTC 3 cut(s) 12, 342, 364
BsaJI CCNNGG 1 cut(s) 650
BsaWI WCCGGW 4 cut(s) 111, 295, 323, 675
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 131, 434, 1089
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 6 cut(s) 194, 314, 393, 399, 473, 864
Bse21I CCTNAGG 1 cut(s) 1029
Bse3DI GCAATG 1 cut(s) 662
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 2 cut(s) 486, 506
BseDI CCNNGG 1 cut(s) 650
BseGI GGATG 3 cut(s) 568, 581, 1002
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 4 cut(s) 118, 131, 434, 1089
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 3 cut(s) 807, 813, 1043
BseNI ACTGG 6 cut(s) 194, 314, 393, 399, 473, 864
BseRI GAGGAG 2 cut(s) 396, 569
BseXI GCAGC 4 cut(s) 445, 448, 714, 841
BseYI CCCAGC 1 cut(s) 541
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 591, 672, 1036
BshNI GGYRCC 2 cut(s) 121, 395
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 8 cut(s) 101, 112, 118, 128, 296, 324, 588, 676
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 118, 131, 434, 1089
BsmAI GTCTC 4 cut(s) 12, 325, 342, 364
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 1027
BsnI GGCC 3 cut(s) 591, 672, 1036
Bso31I GGTCTC 3 cut(s) 12, 342, 364
Bsp143I GATC 3 cut(s) 595, 928, 1051
BspACI CCGC 5 cut(s) 125, 278, 748, 875, 920
BspANI GGCC 3 cut(s) 591, 672, 1036
BspCNI CTCAG 3 cut(s) 808, 814, 1042
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 6 cut(s) 60, 116, 123, 397, 1035, 1068
BspPI GGATC 2 cut(s) 936, 1059
BspT107I GGYRCC 2 cut(s) 121, 395
BspTNI GGTCTC 3 cut(s) 12, 342, 364
BsrDI GCAATG 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 6 cut(s) 194, 314, 393, 399, 473, 864
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 650
BssMI GATC 3 cut(s) 595, 928, 1051
BssT1I CCWWGG 1 cut(s) 650
Bst2UI CCWGG 2 cut(s) 486, 506
Bst4CI ACNGT 3 cut(s) 305, 734, 1062
BstC8I GCNNGC 1 cut(s) 752
BstDEI CTNAG 3 cut(s) 816, 822, 1029
BstEII GGTNACC 1 cut(s) 1056
BstF5I GGATG 3 cut(s) 568, 581, 1002
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 4 cut(s) 440, 854, 1010, 1027
BstKTI GATC 3 cut(s) 598, 931, 1054
BstMAI GTCTC 4 cut(s) 12, 325, 342, 364
BstMBI GATC 3 cut(s) 595, 928, 1051
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 1033
BstNI CCWGG 2 cut(s) 486, 506
BstNSI RCATGY 2 cut(s) 722, 793
BstPI GGTNACC 1 cut(s) 1056
BstSCI CCNGG 3 cut(s) 117, 484, 504
BstSFI CTRYAG 1 cut(s) 1071
BstV1I GCAGC 4 cut(s) 445, 448, 714, 841
BstV2I GAAGAC 2 cut(s) 896, 1106
BstXI CCANNNNNNTGG 1 cut(s) 871
Bsu36I CCTNAGG 1 cut(s) 1029
BsuRI GGCC 3 cut(s) 591, 672, 1036
BtsCI GGATG 3 cut(s) 568, 581, 1002
BtsIMutI CAGTG 3 cut(s) 310, 545, 871
Cac8I GCNNGC 1 cut(s) 752
CciI TCATGA 1 cut(s) 979
CfoI GCGC 4 cut(s) 440, 854, 1010, 1027
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 6 cut(s) 29, 38, 59, 311, 1034, 1067
Csp6I GTAC 5 cut(s) 197, 220, 396, 416, 479
CviAII CATG 5 cut(s) 75, 719, 790, 980, 1079
CviQI GTAC 5 cut(s) 197, 220, 396, 416, 479
DdeI CTNAG 3 cut(s) 816, 822, 1029
DpnI GATC 3 cut(s) 597, 930, 1053
DpnII GATC 3 cut(s) 595, 928, 1051
DraIII CACNNNGTG 2 cut(s) 353, 515
EciI GGCGGA 1 cut(s) 890
Eco130I CCWWGG 1 cut(s) 650
Eco31I GGTCTC 3 cut(s) 12, 342, 364
Eco47I GGWCC 5 cut(s) 29, 38, 59, 311, 1067
Eco57I CTGAAG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 1029
Eco91I GGTNACC 1 cut(s) 1056
EcoO109I RGGNCCY 3 cut(s) 29, 59, 1067
EcoO65I GGTNACC 1 cut(s) 1056
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 2 cut(s) 484, 504
EcoT14I CCWWGG 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 5 cut(s) 78, 722, 793, 983, 1082
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 74, 718, 789, 979, 1078
FauI CCCGC 1 cut(s) 755
FauNDI CATATG 1 cut(s) 708
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 5 cut(s) 125, 459, 462, 703, 855
FokI GGATG 3 cut(s) 575, 588, 1009
Fsp4HI GCNGC 5 cut(s) 125, 459, 462, 703, 855
FspBI CTAG 1 cut(s) 894
GlaI GCGC 4 cut(s) 439, 853, 1009, 1026
GluI GCNGC 5 cut(s) 125, 459, 462, 703, 855
GsaI CCCAGC 1 cut(s) 545
GsuI CTGGAG 1 cut(s) 410
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 3 cut(s) 591, 672, 1036
HapII CCGG 8 cut(s) 101, 112, 118, 128, 296, 324, 588, 676
HhaI GCGC 4 cut(s) 440, 854, 1010, 1027
Hin1II CATG 5 cut(s) 78, 722, 793, 983, 1082
Hin6I GCGC 4 cut(s) 438, 852, 1008, 1025
HinP1I GCGC 4 cut(s) 438, 852, 1008, 1025
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 2 cut(s) 70, 497
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 8 cut(s) 101, 112, 118, 128, 296, 324, 588, 676
HphI GGTGA 2 cut(s) 101, 1050
Hpy166II GTNNAC 4 cut(s) 275, 301, 404, 1015
Hpy188I TCNGA 3 cut(s) 933, 1096, 1119
Hpy188III TCNNGA 3 cut(s) 67, 724, 980
Hpy8I GTNNAC 4 cut(s) 275, 301, 404, 1015
HpyAV CCTTC 2 cut(s) 553, 843
HpyCH4III ACNGT 3 cut(s) 305, 734, 1062
HpyCH4IV ACGT 1 cut(s) 1111
HpyCH4V TGCA 3 cut(s) 7, 779, 951
HpyF10VI GCNNNNNNNGC 1 cut(s) 1033
HpyF3I CTNAG 3 cut(s) 816, 822, 1029
HpySE526I ACGT 1 cut(s) 1111
Hsp92II CATG 5 cut(s) 78, 722, 793, 983, 1082
HspAI GCGC 4 cut(s) 438, 852, 1008, 1025
KpnI GGTACC 1 cut(s) 399
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 595, 928, 1051
Lsp1109I GCAGC 4 cut(s) 445, 448, 714, 841
LweI GCATC 1 cut(s) 946
MaeI CTAG 1 cut(s) 894
MaeII ACGT 1 cut(s) 1111
MaeIII GTNAC 4 cut(s) 289, 767, 799, 1056
MalI GATC 3 cut(s) 597, 930, 1053
MboI GATC 3 cut(s) 595, 928, 1051
MboII GAAGA 8 cut(s) 58, 146, 541, 701, 739, 901, 914, 1106
MluCI AATT 5 cut(s) 49, 149, 223, 409, 492
MmeI TCCRAC 1 cut(s) 1074
MseI TTAA 3 cut(s) 300, 491, 1126
MspI CCGG 8 cut(s) 101, 112, 118, 128, 296, 324, 588, 676
MspR9I CCNGG 3 cut(s) 119, 486, 506
Mva1269I GAATGC 1 cut(s) 1027
MvaI CCWGG 2 cut(s) 486, 506
MwoI GCNNNNNNNGC 1 cut(s) 1033
NciI CCSGG 1 cut(s) 119
NdeI CATATG 1 cut(s) 708
NdeII GATC 3 cut(s) 595, 928, 1051
NlaIII CATG 5 cut(s) 78, 722, 793, 983, 1082
NlaIV GGNNCC 6 cut(s) 60, 116, 123, 397, 1035, 1068
NmuCI GTSAC 1 cut(s) 1056
NspI RCATGY 2 cut(s) 722, 793
PagI TCATGA 1 cut(s) 979
PctI GAATGC 1 cut(s) 1027
PfeI GAWTC 2 cut(s) 70, 497
PflMI CCANNNNNTGG 1 cut(s) 1089
PkrI GCNGC 5 cut(s) 126, 460, 463, 704, 856
PpuMI RGGWCCY 3 cut(s) 29, 59, 1067
Psp5II RGGWCCY 3 cut(s) 29, 59, 1067
Psp6I CCWGG 2 cut(s) 484, 504
PspEI GGTNACC 1 cut(s) 1056
PspFI CCCAGC 1 cut(s) 541
PspGI CCWGG 2 cut(s) 484, 504
PspN4I GGNNCC 6 cut(s) 60, 116, 123, 397, 1035, 1068
PspPI GGNCC 6 cut(s) 29, 38, 59, 311, 1034, 1067
PspPPI RGGWCCY 3 cut(s) 29, 59, 1067
RsaI GTAC 5 cut(s) 198, 221, 397, 417, 480
RsaNI GTAC 5 cut(s) 197, 220, 396, 416, 479
SaqAI TTAA 3 cut(s) 300, 491, 1126
SatI GCNGC 5 cut(s) 125, 459, 462, 703, 855
Sau3AI GATC 3 cut(s) 595, 928, 1051
Sau96I GGNCC 6 cut(s) 29, 38, 59, 311, 1034, 1067
ScaI AGTACT 1 cut(s) 480
ScrFI CCNGG 3 cut(s) 119, 486, 506
SetI ASST 9 cut(s) 31, 163, 205, 355, 421, 517, 668, 835, 1114
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 5 cut(s) 29, 38, 59, 311, 1067
SpeI ACTAGT 1 cut(s) 893
Sse9I AATT 5 cut(s) 49, 149, 223, 409, 492
SsiI CCGC 5 cut(s) 125, 278, 748, 875, 920
SspMI CTAG 1 cut(s) 894
StyD4I CCNGG 3 cut(s) 117, 484, 504
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 3 cut(s) 305, 734, 1062
TaiI ACGT 1 cut(s) 1114
TaqI TCGA 1 cut(s) 163
TaqII GACCGA 2 cut(s) 122, 1044
TasI AATT 5 cut(s) 49, 149, 223, 409, 492
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 2 cut(s) 70, 497
Tru1I TTAA 3 cut(s) 300, 491, 1126
Tru9I TTAA 3 cut(s) 300, 491, 1126
TscAI CASTG 3 cut(s) 310, 552, 871
TseFI GTSAC 1 cut(s) 1056
TseI GCWGC 4 cut(s) 458, 461, 702, 854
Tsp45I GTSAC 1 cut(s) 1056
TspDTI ATGAA 3 cut(s) 59, 198, 915
TspRI CASTG 3 cut(s) 310, 552, 871
Van91I CCANNNNNTGG 1 cut(s) 1089
VpaK11BI GGWCC 5 cut(s) 29, 38, 59, 311, 1067
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 722, 793
XmiI GTMKAC 1 cut(s) 274
XspI CTAG 1 cut(s) 894
ZrmI AGTACT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.