Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

128936 .. 131799

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggctctgaacagcaggcatcatcaaccacaatatgctatctggggtgaacaaaatagccaggagattgcctgtgaggtggaagcaactgctgctgcctaccacattttccttaatgtttctctgcttggttccaagtgcattgaggaggaggacctcatgaggttcatgattgaggaagaggtggaagttgcatttttgctgaagagctctaaaagattagctgcattgtattgtggcttcttttggtggaaatcgcaaccacaaaagtacaagtcttcctctcttcggagctcgtattggaaatcacaaccaactgatgagaattttggaaaagctaaacatcacatgctttgtgcagcccccacagagttaatctcaattgaactaaattcgatgctggatgatcagttcaatcatagttcagcaaattgtgtccctcatcgtctaccaccgcaaggcgtaactccggttaaagatgctggtccactagtctctggtttgcttgggtctctaatggcacaaggtgtgatctcattgaaaaaccaaagcagaggaggacaggagggtgctagttcactaaattctgtacctcttgtaccacagcaaggtggattgcctgttcaaaatgctgctgctgatgttccagtagttcttcctgaggagaaggatgctgtggtaggatgtgagttctccggccttgatctaaatctgcgtcgcaaatctgtggtaatcggcttgtatgagggtggtctgccaaggcaatgtaaaagctgtggcctccggttcaagtgtgaagcacagcacagcaggcatattgattgtcatgtcaagaagaaccgtatgtccaaaacccgcaagcagaagccctctcgtaacttctatgcaactacaagcatgtggctcgttactgatacagaggctgaggctgaggcattactttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

315

Amino Acids

34.86

Weight (kDa)

7.58

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	2 cut(s)	455, 856
AcsI	RAATTY	3 cut(s)	325, 391, 583
AcuI	CTGAAG	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	3 cut(s)	272, 591, 600
AfiI	CCNNNNNNNGG	3 cut(s)	288, 458, 608
AgsI	TTSAA	5 cut(s)	386, 415, 541, 626, 790
AhlI	ACTAGT	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	60
AloI	GAACNNNNNNTCC	6 cut(s)	395, 427, 606, 638, 830, 862
AluBI	AGCT	5 cut(s)	210, 224, 294, 338, 774
AluI	AGCT	5 cut(s)	210, 224, 294, 338, 774
Alw21I	GWGCWC	2 cut(s)	212, 296
Alw26I	GTCTC	2 cut(s)	499, 516
AlwNI	CAGNNNCTG	1 cut(s)	923
AoxI	GGCC	2 cut(s)	697, 778
ApeKI	GCWGC	6 cut(s)	92, 95, 224, 359, 632, 635
ApoI	RAATTY	3 cut(s)	325, 391, 583
AspS9I	GGNCC	2 cut(s)	154, 485
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	154, 485
AxyI	CCTNAGG	1 cut(s)	660
BanII	GRGCYC	2 cut(s)	212, 296
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	212, 296
BbvCI	CCTCAGC	2 cut(s)	924, 930
BbvI	GCAGC	6 cut(s)	79, 82, 211, 371, 619, 622
BcgI	CGANNNNNNTGC	2 cut(s)	886, 920
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	499, 516
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	2 cut(s)	491, 573
BisI	GCNGC	6 cut(s)	93, 96, 225, 360, 633, 636
BlsI	GCNGC	6 cut(s)	94, 97, 226, 361, 634, 637
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	2 cut(s)	154, 485
BmgT120I	GGNCC	2 cut(s)	154, 485
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	4 cut(s)	28, 387, 469, 661
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
Bpu10I	CCTNAGC	2 cut(s)	924, 930
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	758
BsaWI	WCCGGW	2 cut(s)	469, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 458, 608
Bse1I	ACTGG	1 cut(s)	647
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	770
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	758
BseGI	GGATG	3 cut(s)	409, 676, 689
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	3 cut(s)	288, 458, 608
BseMI	GCAATG	1 cut(s)	770
BseMII	CTCAG	3 cut(s)	651, 915, 921
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	4 cut(s)	161, 164, 570, 677
BseXI	GCAGC	6 cut(s)	79, 82, 211, 371, 619, 622
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	699, 780
BsiHKAI	GWGCWC	2 cut(s)	212, 296
BsiSI	CCGG	3 cut(s)	470, 696, 784
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	288, 458, 608
BsmAI	GTCTC	2 cut(s)	499, 516
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	699, 780
Bso31I	GGTCTC	1 cut(s)	516
Bsp1286I	GDGCHC	2 cut(s)	212, 296
Bsp143I	GATC	3 cut(s)	406, 531, 703
BspACI	CCGC	2 cut(s)	455, 856
BspANI	GGCC	2 cut(s)	699, 780
BspCNI	CTCAG	3 cut(s)	652, 916, 922
BspHI	TCATGA	2 cut(s)	159, 168
BspLI	GGNNCC	1 cut(s)	133
BspQI	GCTCTTC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	516
BsrDI	GCAATG	1 cut(s)	770
BsrI	ACTGG	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	758
BssMI	GATC	3 cut(s)	406, 531, 703
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	842
Bst6I	CTCTTC	3 cut(s)	174, 200, 291
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	17, 812, 860
BstDEI	CTNAG	4 cut(s)	660, 924, 930, 945
BstF5I	GGATG	3 cut(s)	409, 676, 689
BstKTI	GATC	3 cut(s)	409, 534, 706
BstMAI	GTCTC	2 cut(s)	499, 516
BstMBI	GATC	3 cut(s)	406, 531, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 811
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	2 cut(s)	352, 901
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	6 cut(s)	79, 82, 211, 371, 619, 622
BstV2I	GAAGAC	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	699, 780
BtsCI	GGATG	3 cut(s)	409, 676, 689
Cac8I	GCNNGC	3 cut(s)	17, 812, 860
CaiI	CAGNNNCTG	1 cut(s)	923
CciI	TCATGA	2 cut(s)	159, 168
Cfr13I	GGNCC	2 cut(s)	154, 485
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	3 cut(s)	271, 590, 599
CviAII	CATG	5 cut(s)	160, 169, 349, 827, 898
CviQI	GTAC	3 cut(s)	271, 590, 599
DdeI	CTNAG	4 cut(s)	660, 924, 930, 945
DpnI	GATC	3 cut(s)	408, 533, 705
DpnII	GATC	3 cut(s)	406, 531, 703
DraIII	CACNNNGTG	1 cut(s)	527
Eam1104I	CTCTTC	3 cut(s)	174, 200, 291
EarI	CTCTTC	3 cut(s)	174, 200, 291
Ecl136II	GAGCTC	2 cut(s)	210, 294
Eco130I	CCWWGG	1 cut(s)	758
Eco24I	GRGCYC	2 cut(s)	212, 296
Eco31I	GGTCTC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	154, 485
Eco53kI	GAGCTC	2 cut(s)	210, 294
Eco57I	CTGAAG	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	660
EcoICRI	GAGCTC	2 cut(s)	210, 294
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	758
EcoT38I	GRGCYC	2 cut(s)	212, 296
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	5 cut(s)	163, 172, 352, 830, 901
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	5 cut(s)	159, 168, 348, 826, 897
FauI	CCCGC	1 cut(s)	863
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	6 cut(s)	93, 96, 225, 360, 633, 636
FokI	GGATG	3 cut(s)	416, 683, 696
FriOI	GRGCYC	2 cut(s)	212, 296
Fsp4HI	GCNGC	6 cut(s)	93, 96, 225, 360, 633, 636
FspBI	CTAG	2 cut(s)	491, 573
GluI	GCNGC	6 cut(s)	93, 96, 225, 360, 633, 636
HaeIII	GGCC	2 cut(s)	699, 780
HapII	CCGG	3 cut(s)	470, 696, 784
HgaI	GACGC	1 cut(s)	704
Hin1II	CATG	5 cut(s)	163, 172, 352, 830, 901
HpaII	CCGG	3 cut(s)	470, 696, 784
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	4 cut(s)	50, 449, 488, 578
Hpy188I	TCNGA	2 cut(s)	9, 291
Hpy188III	TCNNGA	4 cut(s)	160, 169, 659, 832
Hpy8I	GTNNAC	4 cut(s)	50, 449, 488, 578
Hpy99I	CGWCG	1 cut(s)	720
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	1 cut(s)	842
HpyCH4V	TGCA	5 cut(s)	141, 194, 227, 359, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 811
HpyF3I	CTNAG	4 cut(s)	660, 924, 930, 945
Hsp92II	CATG	5 cut(s)	163, 172, 352, 830, 901
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	406, 531, 703
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	291
Lsp1109I	GCAGC	6 cut(s)	79, 82, 211, 371, 619, 622
LweI	GCATC	4 cut(s)	28, 387, 469, 661
MaeI	CTAG	2 cut(s)	491, 573
MaeIII	GTNAC	3 cut(s)	463, 875, 907
MalI	GATC	3 cut(s)	408, 533, 705
MboI	GATC	3 cut(s)	406, 531, 703
MboII	GAAGA	6 cut(s)	191, 217, 270, 278, 647, 847
MfeI	CAATTG	1 cut(s)	381
MhlI	GDGCHC	2 cut(s)	212, 296
MluCI	AATT	5 cut(s)	325, 381, 391, 430, 583
MseI	TTAA	3 cut(s)	114, 374, 474
MspI	CCGG	3 cut(s)	470, 696, 784
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	92, 811
NdeII	GATC	3 cut(s)	406, 531, 703
NlaIII	CATG	5 cut(s)	163, 172, 352, 830, 901
NlaIV	GGNNCC	1 cut(s)	133
NspI	RCATGY	2 cut(s)	352, 901
PagI	TCATGA	2 cut(s)	159, 168
PciSI	GCTCTTC	1 cut(s)	200
PkrI	GCNGC	6 cut(s)	94, 97, 226, 361, 634, 637
PpuMI	RGGWCCY	1 cut(s)	154
Psp124BI	GAGCTC	2 cut(s)	212, 296
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	154, 485
PspPPI	RGGWCCY	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	923
RsaI	GTAC	3 cut(s)	272, 591, 600
RsaNI	GTAC	3 cut(s)	271, 590, 599
SacI	GAGCTC	2 cut(s)	212, 296
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	114, 374, 474
SatI	GCNGC	6 cut(s)	93, 96, 225, 360, 633, 636
Sau3AI	GATC	3 cut(s)	406, 531, 703
Sau96I	GGNCC	2 cut(s)	154, 485
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	212, 296
SfaNI	GCATC	4 cut(s)	28, 387, 469, 661
SinI	GGWCC	2 cut(s)	154, 485
SpeI	ACTAGT	1 cut(s)	490
Sse9I	AATT	5 cut(s)	325, 381, 391, 430, 583
SsiI	CCGC	2 cut(s)	455, 856
SspMI	CTAG	2 cut(s)	491, 573
SstI	GAGCTC	2 cut(s)	212, 296
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	1 cut(s)	842
TaqI	TCGA	1 cut(s)	395
TasI	AATT	5 cut(s)	325, 381, 391, 430, 583
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	114, 374, 474
Tru9I	TTAA	3 cut(s)	114, 374, 474
TseI	GCWGC	6 cut(s)	92, 95, 224, 359, 632, 635
TspDTI	ATGAA	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	154, 485
XapI	RAATTY	3 cut(s)	325, 391, 583
XceI	RCATGY	2 cut(s)	352, 901
XmiI	GTMKAC	1 cut(s)	448
XspI	CTAG	2 cut(s)	491, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.