Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

26086783 .. 26090292

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48730

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAAGCAACTGCTGCTGCCTACCACATTTTCCTTAATGTTTCTCTGCTTGGTTCCAAGTCCATTGAGGAGGAGGACCTCATGAGGTTCATGACTGAGGAAGAGGTGCTGAAGAGCTCTAACAGATTCGCTGGTAAGCCCGTGAAGGTCTACAACACTCGCAAAAGATTAATTTATAGTTTAACTGACACCGAAAAAGGTGTCATTTCGTTGAAGAGACAAAGCCCGGTACTGAAAGAGGAGAAGGATGCTGTGGTAGGATGTGAGTTTTCCGGCCTTGATCTAAATCTGCGTCACGAATCTGTGGTAATCAGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAAAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACCTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGTAGAGGCTGAGACTGAGGCATTACCTTCTGGTGTAGTTTTGTGCGTTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCACAGACGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTGCTGTTTACTTGAATGCGCCTCAGGGGCCAGCTCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

270

Amino Acids

30.58

Weight (kDa)

8.32

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	195 - 261	2.4e-28	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	727
AciI	CCGC	4 cut(s)	433, 560, 605, 802
AclWI	GGATC	2 cut(s)	621, 744
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	774
AgsI	TTSAA	3 cut(s)	214, 367, 706
AhlI	ACTAGT	1 cut(s)	578
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	4 cut(s)	117, 315, 351, 725
AluI	AGCT	4 cut(s)	117, 315, 351, 725
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	211, 497
AlwI	GGATC	2 cut(s)	621, 744
Aor13HI	TCCGGA	1 cut(s)	727
AoxI	GGCC	3 cut(s)	274, 355, 719
ApeKI	GCWGC	3 cut(s)	14, 17, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AseI	ATTAAT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	3 cut(s)	76, 719, 752
AsuC2I	CCSGG	1 cut(s)	227
AvaII	GGWCC	2 cut(s)	76, 752
AxyI	CCTNAGG	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	4, 399
BccI	CCATC	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	211, 497
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	756
BglI	GCCNNNNNGGC	1 cut(s)	718
BisI	GCNGC	3 cut(s)	15, 18, 388
BlsI	GCNGC	3 cut(s)	16, 19, 389
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	76, 752
BmgT120I	GGNCC	3 cut(s)	76, 719, 752
BmiI	GGNNCC	3 cut(s)	55, 720, 753
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	3 cut(s)	360, 417, 727
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	549
Bse21I	CCTNAGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	727
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	4 cut(s)	253, 266, 426, 687
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	4 cut(s)	87, 492, 498, 728
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	3 cut(s)	83, 86, 254
BseXI	GCAGC	2 cut(s)	4, 399
BshFI	GGCC	3 cut(s)	276, 357, 721
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	5 cut(s)	227, 273, 361, 418, 728
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	2 cut(s)	211, 497
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	3 cut(s)	276, 357, 721
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	727
Bsp143I	GATC	3 cut(s)	280, 613, 736
BspACI	CCGC	4 cut(s)	433, 560, 605, 802
BspANI	GGCC	3 cut(s)	276, 357, 721
BspCNI	CTCAG	4 cut(s)	88, 493, 499, 727
BspEI	TCCGGA	1 cut(s)	727
BspHI	TCATGA	3 cut(s)	81, 90, 664
BspLI	GGNNCC	3 cut(s)	55, 720, 753
BspPI	GGATC	2 cut(s)	621, 744
BspQI	GCTCTTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	3 cut(s)	280, 613, 736
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	747
Bst6I	CTCTTC	3 cut(s)	96, 107, 209
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	437, 723
BstDEI	CTNAG	4 cut(s)	96, 501, 507, 714
BstF5I	GGATG	4 cut(s)	253, 266, 426, 687
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	3 cut(s)	283, 616, 739
BstMAI	GTCTC	2 cut(s)	211, 497
BstMBI	GATC	3 cut(s)	280, 613, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 718
BstNSI	RCATGY	2 cut(s)	407, 478
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	4, 399
BstV2I	GAAGAC	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	714
BsuRI	GGCC	3 cut(s)	276, 357, 721
BtsCI	GGATG	4 cut(s)	253, 266, 426, 687
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	437, 723
CciI	TCATGA	3 cut(s)	81, 90, 664
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	3 cut(s)	76, 719, 752
CseI	GACGC	2 cut(s)	281, 650
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	6 cut(s)	82, 91, 404, 475, 665, 764
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	4 cut(s)	96, 501, 507, 714
DpnI	GATC	3 cut(s)	282, 615, 738
DpnII	GATC	3 cut(s)	280, 613, 736
Eam1104I	CTCTTC	3 cut(s)	96, 107, 209
EarI	CTCTTC	3 cut(s)	96, 107, 209
EciI	GGCGGA	1 cut(s)	575
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	76, 752
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	2 cut(s)	76, 752
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
FatI	CATG	6 cut(s)	81, 90, 403, 474, 664, 763
FauI	CCCGC	1 cut(s)	440
FauNDI	CATATG	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	15, 18, 388
FokI	GGATG	4 cut(s)	260, 273, 433, 694
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	15, 18, 388
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	3 cut(s)	15, 18, 388
HaeIII	GGCC	3 cut(s)	276, 357, 721
HapII	CCGG	5 cut(s)	227, 273, 361, 418, 728
HgaI	GACGC	2 cut(s)	281, 650
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HinfI	GANTC	2 cut(s)	126, 299
HpaII	CCGG	5 cut(s)	227, 273, 361, 418, 728
Hpy166II	GTNNAC	2 cut(s)	151, 700
Hpy188I	TCNGA	2 cut(s)	618, 781
Hpy188III	TCNNGA	6 cut(s)	82, 91, 296, 409, 665, 728
Hpy8I	GTNNAC	2 cut(s)	151, 700
HpyAV	CCTTC	3 cut(s)	139, 238, 528
HpyCH4III	ACNGT	1 cut(s)	747
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	2 cut(s)	464, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 718
HpyF3I	CTNAG	4 cut(s)	96, 501, 507, 714
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
HspAI	GCGC	1 cut(s)	710
Kpn2I	TCCGGA	1 cut(s)	727
Kzo9I	GATC	3 cut(s)	280, 613, 736
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	2 cut(s)	4, 399
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	4 cut(s)	293, 452, 484, 741
MalI	GATC	3 cut(s)	282, 615, 738
MboI	GATC	3 cut(s)	280, 613, 736
MboII	GAAGA	6 cut(s)	113, 124, 226, 424, 586, 599
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	759
MroI	TCCGGA	1 cut(s)	727
MseI	TTAA	3 cut(s)	36, 170, 182
MspI	CCGG	5 cut(s)	227, 273, 361, 418, 728
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	712
MwoI	GCNNNNNNNGC	2 cut(s)	14, 718
NciI	CCSGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	3 cut(s)	280, 613, 736
NlaIII	CATG	6 cut(s)	85, 94, 407, 478, 668, 767
NlaIV	GGNNCC	3 cut(s)	55, 720, 753
NmuCI	GTSAC	2 cut(s)	293, 741
NspI	RCATGY	2 cut(s)	407, 478
PagI	TCATGA	3 cut(s)	81, 90, 664
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	126, 299
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	3 cut(s)	16, 19, 389
PpuMI	RGGWCCY	2 cut(s)	76, 752
PshBI	ATTAAT	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	2 cut(s)	76, 752
PspN4I	GGNNCC	3 cut(s)	55, 720, 753
PspPI	GGNCC	3 cut(s)	76, 719, 752
PspPPI	RGGWCCY	2 cut(s)	76, 752
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	36, 170, 182
SatI	GCNGC	3 cut(s)	15, 18, 388
Sau3AI	GATC	3 cut(s)	280, 613, 736
Sau96I	GGNCC	3 cut(s)	76, 719, 752
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	2 cut(s)	76, 752
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	4 cut(s)	433, 560, 605, 802
SspMI	CTAG	1 cut(s)	579
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	747
TaiI	ACGT	1 cut(s)	799
TaqII	GACCGA	1 cut(s)	729
TasI	AATT	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	126, 299
Tru1I	TTAA	3 cut(s)	36, 170, 182
Tru9I	TTAA	3 cut(s)	36, 170, 182
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	293, 741
TseI	GCWGC	3 cut(s)	14, 17, 387
Tsp45I	GTSAC	2 cut(s)	293, 741
TspDTI	ATGAA	2 cut(s)	79, 600
TspRI	CASTG	1 cut(s)	556
Van91I	CCANNNNNTGG	1 cut(s)	774
VpaK11BI	GGWCC	2 cut(s)	76, 752
VspI	ATTAAT	1 cut(s)	170
XceI	RCATGY	2 cut(s)	407, 478
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.