Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Forward (+)

17522486 .. 17524003

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCATCAAACGGATCCTTCTCTGCTCAGAGAAACGCAAACGCTGGAACAACGATGAAGAGACGAAACGACAATCGCGGTTACGGTGGCGGAATCGGATGTTATCAAGAGGAGAGGAACCGTTACGCGCCGCCGCAAAAACGTTTCAGATCGCAACTGCAACAGCAATTCCGATCTGGTCATAATCCTCTGTATCATTATGGTAGTAATACTAATAATAACGTGTCTAGGGTTTCTTCTCAGTCATATAACAATTACGGTGTTGATGTGATTGCTTCTAATTCAAGTTTTGCTTTACCTAACAATGATTCTAACACCAACAATTATCAGAAACCCTTTGTTGTTTATGGAAACCCTAATCCCCAAATTGTTCCTCTTCCATTACCTTATCGTAAGCTTGATCCTTTAGATTCGTTGCCTCAATGGGTTCCAAATTCAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAACACACCTGATTTTACGAATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCTCAATCGATGCATCAACCAATTGTTTTAAGCAAAGAATTGACTGATTTGCTTAGTCTTCTTAACAATGAGAAAGAGAAGAAAACTTCAGAAGCAAGTAATAATGATTCATTGCCTGTTGGATTAAGCTTTGACAATCCATCATCGCTTAATGTTCGACATGAATCTGTGATTAAGTCTCTGTATTCTGATATGCCGAGGCAATGTACTTCGTGTGGGGTGAGATTCAAATGTCAAGAAGAGCATAGTAAACATATGGATTGGCACGTAAGGAAGAACAGGTCGGTGAAAACCACTACAAGACTTGGTCAGCAACCGAAGAAATCGAGGGGATGGTTAGCGAGTGCATCTTTATGGCTTTGTGCACCAACGGGAGGAGGGACCGTAGAAGTAGCATCTTTTGGAGGAGGAGAAATGCAGAAGAAGAATGAAAAGGATCAAGTACAAAAACAACACATGGTGCCTGCGGATGAAGATCAGAAGAATTGCGCGTTATGCGTAGAGCCGTTTGAAGAGTTCTTTAGCCATGAAGCTGATGACTGGATGTACAAAGATGCAGTCTACTTAACCAAGAATGGTCGTATAGTTCATGTTAAGTGTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCGTCGAGGGTAATGTCTGTTACAGTTCCATCGGTTGCGAAAGCTATACTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

410

Amino Acids

46.05

Weight (kDa)

9.14

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	330 - 382	6.6e-19	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1165
AccB1I	GGYRCC	1 cut(s)	1000
AccI	GTMKAC	1 cut(s)	1101
AccII	CGCG	3 cut(s)	78, 128, 1031
AciI	CCGC	5 cut(s)	78, 90, 131, 134, 1007
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	4 cut(s)	9, 22, 395, 984
AcsI	RAATTY	2 cut(s)	433, 466
AcuI	CTGAAG	1 cut(s)	612
AdeI	CACNNNGTG	1 cut(s)	1000
AfaI	GTAC	4 cut(s)	474, 748, 984, 1088
AfiI	CCNNNNNNNGG	1 cut(s)	914
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	5 cut(s)	285, 438, 503, 769, 1052
AluBI	AGCT	4 cut(s)	397, 669, 1073, 1220
AluI	AGCT	4 cut(s)	397, 669, 1073, 1220
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	3 cut(s)	55, 546, 723
Alw44I	GTGCAC	1 cut(s)	903
AlwI	GGATC	4 cut(s)	9, 22, 395, 984
ApaLI	GTGCAC	1 cut(s)	903
ApoI	RAATTY	2 cut(s)	433, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	1083, 1115
AspLEI	GCGC	2 cut(s)	130, 1031
AspS9I	GGNCC	1 cut(s)	921
AsuHPI	GGTGA	2 cut(s)	772, 838
AsuII	TTCGAA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	921
BaeGI	GKGCMC	1 cut(s)	907
BamHI	GGATCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	1000
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	907
BccI	CCATC	3 cut(s)	688, 867, 1213
BceAI	ACGGC	2 cut(s)	1030, 1162
BcoDI	GTCTC	3 cut(s)	55, 546, 723
BfaI	CTAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	1165
BisI	GCNGC	2 cut(s)	131, 134
BlsI	GCNGC	2 cut(s)	132, 135
Bme18I	GGWCC	1 cut(s)	921
BmgT120I	GGNCC	1 cut(s)	921
BmiI	GGNNCC	5 cut(s)	16, 119, 429, 922, 1002
BmsI	GCATC	6 cut(s)	14, 540, 562, 896, 944, 1084
BpiI	GAAGAC	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	1161
Bpu14I	TTCGAA	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	548
BsaAI	YACGTR	1 cut(s)	808
BsaBI	GATNNNNATC	1 cut(s)	1014
BsaJI	CCNNGG	1 cut(s)	737
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	914
Bse1I	ACTGG	1 cut(s)	1085
Bse3DI	GCAATG	2 cut(s)	650, 749
Bse8I	GATNNNNATC	1 cut(s)	1014
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	737
BseGI	GGATG	4 cut(s)	104, 878, 1015, 1089
BseJI	GATNNNNATC	1 cut(s)	1014
BseLI	CCNNNNNNNGG	1 cut(s)	914
BseMI	GCAATG	2 cut(s)	650, 749
BseMII	CTCAG	2 cut(s)	41, 254
BseNI	ACTGG	1 cut(s)	1085
BseRI	GAGGAG	4 cut(s)	125, 930, 960, 963
BseSI	GKGCMC	1 cut(s)	907
Bsh1236I	CGCG	3 cut(s)	78, 128, 1031
BshNI	GGYRCC	1 cut(s)	1000
BshVI	ATCGAT	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	907
BslFI	GGGAC	1 cut(s)	934
BslI	CCNNNNNNNGG	1 cut(s)	914
BsmAI	GTCTC	3 cut(s)	55, 546, 723
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	934
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp1407I	TGTACA	1 cut(s)	1086
Bsp143I	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
BspACI	CCGC	5 cut(s)	78, 90, 131, 134, 1007
BspCNI	CTCAG	2 cut(s)	40, 253
BspDI	ATCGAT	1 cut(s)	548
BspFNI	CGCG	3 cut(s)	78, 128, 1031
BspLI	GGNNCC	5 cut(s)	16, 119, 429, 922, 1002
BspMI	ACCTGC	1 cut(s)	1165
BspPI	GGATC	4 cut(s)	9, 22, 395, 984
BspQI	GCTCTTC	1 cut(s)	774
BspT104I	TTCGAA	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	1000
BsrDI	GCAATG	2 cut(s)	650, 749
BsrGI	TGTACA	1 cut(s)	1086
BsrI	ACTGG	1 cut(s)	1085
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
Bst4CI	ACNGT	5 cut(s)	86, 122, 260, 925, 1201
Bst6I	CTCTTC	4 cut(s)	53, 381, 774, 1047
BstAUI	TGTACA	1 cut(s)	1086
BstBAI	YACGTR	1 cut(s)	808
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	4 cut(s)	27, 240, 593, 1161
BstF5I	GGATG	4 cut(s)	104, 878, 1015, 1089
BstFNI	CGCG	3 cut(s)	78, 128, 1031
BstHHI	GCGC	2 cut(s)	130, 1031
BstKTI	GATC	6 cut(s)	17, 152, 176, 403, 979, 1018
BstMAI	GTCTC	3 cut(s)	55, 546, 723
BstMBI	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	1035
BstSLI	GKGCMC	1 cut(s)	907
BstUI	CGCG	3 cut(s)	78, 128, 1031
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	548
BsuTUI	ATCGAT	1 cut(s)	548
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	4 cut(s)	104, 878, 1015, 1089
BveI	ACCTGC	1 cut(s)	1165
Cac8I	GCNNGC	1 cut(s)	1005
CfoI	GCGC	2 cut(s)	130, 1031
Cfr13I	GGNCC	1 cut(s)	921
ClaI	ATCGAT	1 cut(s)	548
Csp6I	GTAC	4 cut(s)	473, 747, 983, 1087
CviAII	CATG	5 cut(s)	526, 701, 997, 1067, 1130
CviJI	RGCY	8 cut(s)	397, 669, 898, 1045, 1065, 1073, 1177, 1220
CviKI_1	RGCY	8 cut(s)	397, 669, 898, 1045, 1065, 1073, 1177, 1220
CviQI	GTAC	4 cut(s)	473, 747, 983, 1087
DdeI	CTNAG	4 cut(s)	27, 240, 593, 1161
DpnI	GATC	6 cut(s)	16, 151, 175, 402, 978, 1017
DpnII	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
DraIII	CACNNNGTG	1 cut(s)	1000
Eam1104I	CTCTTC	4 cut(s)	53, 381, 774, 1047
EarI	CTCTTC	4 cut(s)	53, 381, 774, 1047
EciI	GGCGGA	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	921
Eco57I	CTGAAG	1 cut(s)	612
EcoT22I	ATGCAT	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	5 cut(s)	529, 704, 1000, 1070, 1133
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FaqI	GGGAC	1 cut(s)	934
FatI	CATG	5 cut(s)	525, 700, 996, 1066, 1129
FauNDI	CATATG	1 cut(s)	795
FblI	GTMKAC	1 cut(s)	1101
Fnu4HI	GCNGC	2 cut(s)	131, 134
FokI	GGATG	4 cut(s)	111, 885, 1022, 1096
Fsp4HI	GCNGC	2 cut(s)	131, 134
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	2 cut(s)	129, 1030
GluI	GCNGC	2 cut(s)	131, 134
HhaI	GCGC	2 cut(s)	130, 1031
Hin1II	CATG	5 cut(s)	529, 704, 1000, 1070, 1133
Hin6I	GCGC	2 cut(s)	128, 1029
HinP1I	GCGC	2 cut(s)	128, 1029
HindIII	AAGCTT	2 cut(s)	395, 667
HinfI	GANTC	7 cut(s)	93, 308, 410, 514, 647, 704, 765
HphI	GGTGA	2 cut(s)	772, 838
Hpy166II	GTNNAC	3 cut(s)	791, 905, 1102
Hpy188III	TCNNGA	2 cut(s)	107, 776
Hpy8I	GTNNAC	3 cut(s)	791, 905, 1102
Hpy99I	CGWCG	1 cut(s)	1183
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	5 cut(s)	86, 122, 260, 925, 1201
HpyCH4IV	ACGT	3 cut(s)	142, 222, 807
HpyCH4V	TGCA	6 cut(s)	160, 553, 887, 905, 958, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1035
HpyF3I	CTNAG	4 cut(s)	27, 240, 593, 1161
HpySE526I	ACGT	3 cut(s)	142, 222, 807
Hsp92II	CATG	5 cut(s)	529, 704, 1000, 1070, 1133
HspAI	GCGC	2 cut(s)	128, 1029
Kzo9I	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
LguI	GCTCTTC	1 cut(s)	774
LweI	GCATC	6 cut(s)	14, 540, 562, 896, 944, 1084
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	142, 222, 807
MaeIII	GTNAC	3 cut(s)	80, 122, 1195
MalI	GATC	6 cut(s)	16, 151, 175, 402, 978, 1017
MboI	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	907
MmeI	TCCRAC	1 cut(s)	640
Mph1103I	ATGCAT	1 cut(s)	555
MseI	TTAA	7 cut(s)	569, 603, 665, 690, 714, 1106, 1134
MslI	CAYNNNNRTG	1 cut(s)	892
MunI	CAATTG	1 cut(s)	561
MvnI	CGCG	3 cut(s)	78, 128, 1031
MwoI	GCNNNNNNNGC	1 cut(s)	1035
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
NlaIII	CATG	5 cut(s)	529, 704, 1000, 1070, 1133
NlaIV	GGNNCC	5 cut(s)	16, 119, 429, 922, 1002
NmeAIII	GCCGAG	1 cut(s)	762
NsiI	ATGCAT	1 cut(s)	555
NspV	TTCGAA	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	774
PfeI	GAWTC	7 cut(s)	93, 308, 410, 514, 647, 704, 765
PflFI	GACNNNGTC	1 cut(s)	846
PkrI	GCNGC	2 cut(s)	132, 135
Ppu21I	YACGTR	1 cut(s)	808
Psp1406I	AACGTT	1 cut(s)	142
PspN4I	GGNNCC	5 cut(s)	16, 119, 429, 922, 1002
PspPI	GGNCC	1 cut(s)	921
PsuI	RGATCY	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	846
RsaI	GTAC	4 cut(s)	474, 748, 984, 1088
RsaNI	GTAC	4 cut(s)	473, 747, 983, 1087
RseI	CAYNNNNRTG	1 cut(s)	892
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	7 cut(s)	569, 603, 665, 690, 714, 1106, 1134
SatI	GCNGC	2 cut(s)	131, 134
Sau3AI	GATC	6 cut(s)	14, 149, 173, 400, 976, 1015
Sau96I	GGNCC	1 cut(s)	921
SduI	GDGCHC	1 cut(s)	907
SfaNI	GCATC	6 cut(s)	14, 540, 562, 896, 944, 1084
SfuI	TTCGAA	1 cut(s)	521
SinI	GGWCC	1 cut(s)	921
SmiMI	CAYNNNNRTG	1 cut(s)	892
SsiI	CCGC	5 cut(s)	78, 90, 131, 134, 1007
SspMI	CTAG	1 cut(s)	228
TaaI	ACNGT	5 cut(s)	86, 122, 260, 925, 1201
TaiI	ACGT	3 cut(s)	145, 225, 810
TaqI	TCGA	6 cut(s)	464, 521, 548, 697, 866, 1181
TatI	WGTACW	3 cut(s)	746, 982, 1086
TauI	GCSGC	2 cut(s)	133, 136
TfiI	GAWTC	7 cut(s)	93, 308, 410, 514, 647, 704, 765
Tru1I	TTAA	7 cut(s)	569, 603, 665, 690, 714, 1106, 1134
Tru9I	TTAA	7 cut(s)	569, 603, 665, 690, 714, 1106, 1134
TspDTI	ATGAA	8 cut(s)	71, 527, 639, 717, 984, 1026, 1083, 1118
TspGWI	ACGGA	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	846
VneI	GTGCAC	1 cut(s)	903
VpaK11BI	GGWCC	1 cut(s)	921
XapI	RAATTY	2 cut(s)	433, 466
XmiI	GTMKAC	1 cut(s)	1101
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.