Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

25967999 .. 25968541

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCACAAGGTGTGGTCTCATTGAAAAATCAAAGCAGAGGAGGACTGGAGGGTACTAGTTCACTAAATTATGTACCTCCTGTACCACAGCGAGGCGCATTTCCTGTTCAAAATGATGCTGTTGATGTTCCAGTAGTAGTTCCTGGTTTGATTGATGCTCTCCTGGCACAAGGTGTGATTTCGTTGAAGAAACAAAGCCCGAAACTGAAAGAGGAGAAGGATGTTGTGGTAGGATGTGAGTTTTCCGGCGTTGATCTAAATTTACGTTGCGAATCTGTGGTAATCGGCTTGTATGAGGGTATTGTAAAAGCTGTGGTCTCCGGTTCAAGTGTAAAAAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCAGCAAGCAGAAGCCTTCTCGTAACTTTAGGTGTTGTTTACTTGAATGCGCCTCAGGGGCCAGTGCCAGAGATGGATCGATCACAGTTGGGTCCTATAGTCTATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

180

Amino Acids

19.13

Weight (kDa)

9.54

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	504
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	259
AdeI	CACNNNGTG	2 cut(s)	11, 173
AfaI	GTAC	3 cut(s)	55, 75, 84
AfiI	CCNNNNNNNGG	2 cut(s)	92, 504
AgsI	TTSAA	5 cut(s)	25, 110, 187, 327, 436
AhlI	ACTAGT	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	142, 162
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	22, 322
AlwI	GGATC	1 cut(s)	474
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	98, 442
AspS9I	GGNCC	2 cut(s)	449, 482
AvaII	GGWCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	1 cut(s)	457
BciT130I	CCWGG	2 cut(s)	144, 164
BcoDI	GTCTC	2 cut(s)	22, 322
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	448
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	2 cut(s)	144, 164
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	449, 482
BmiI	GGNNCC	2 cut(s)	450, 483
BmrFI	CCNGG	2 cut(s)	144, 164
BmsI	GCATC	2 cut(s)	106, 145
BpmI	CTGGAG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	469
BsaI	GGTCTC	2 cut(s)	22, 322
BsaWI	WCCGGW	2 cut(s)	320, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 504
Bse1I	ACTGG	3 cut(s)	51, 131, 452
Bse21I	CCTNAGG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	144, 164
BseCI	ATCGAT	1 cut(s)	469
BseGI	GGATG	3 cut(s)	226, 239, 386
BseLI	CCNNNNNNNGG	2 cut(s)	92, 504
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	51, 131, 452
BseRI	GAGGAG	2 cut(s)	54, 227
BseXI	GCAGC	1 cut(s)	359
BshFI	GGCC	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	469
BsiSI	CCGG	3 cut(s)	246, 321, 378
BslI	CCNNNNNNNGG	2 cut(s)	92, 504
BsmAI	GTCTC	2 cut(s)	22, 322
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	451
Bso31I	GGTCTC	2 cut(s)	22, 322
Bsp143I	GATC	3 cut(s)	253, 466, 470
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	457
BspDI	ATCGAT	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	450, 483
BspPI	GGATC	1 cut(s)	474
BspTNI	GGTCTC	2 cut(s)	22, 322
BsrI	ACTGG	3 cut(s)	51, 131, 452
BssMI	GATC	3 cut(s)	253, 466, 470
Bst2UI	CCWGG	2 cut(s)	144, 164
Bst4CI	ACNGT	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	3 cut(s)	226, 239, 386
BstHHI	GCGC	2 cut(s)	98, 442
BstKTI	GATC	3 cut(s)	256, 469, 473
BstMAI	GTCTC	2 cut(s)	22, 322
BstMBI	GATC	3 cut(s)	253, 466, 470
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 448
BstNI	CCWGG	2 cut(s)	144, 164
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	142, 162
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	359
Bsu15I	ATCGAT	1 cut(s)	469
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	451
BsuTUI	ATCGAT	1 cut(s)	469
BtsCI	GGATG	3 cut(s)	226, 239, 386
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	397
CfoI	GCGC	2 cut(s)	98, 442
Cfr13I	GGNCC	2 cut(s)	449, 482
ClaI	ATCGAT	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	54, 74, 83
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	6 cut(s)	198, 288, 311, 350, 405, 451
CviKI_1	RGCY	6 cut(s)	198, 288, 311, 350, 405, 451
CviQI	GTAC	3 cut(s)	54, 74, 83
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	3 cut(s)	255, 468, 472
DpnII	GATC	3 cut(s)	253, 466, 470
DraIII	CACNNNGTG	2 cut(s)	11, 173
Eco31I	GGTCTC	2 cut(s)	22, 322
Eco47I	GGWCC	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	142, 162
FaeI	CATG	1 cut(s)	367
FaiI	YATR	7 cut(s)	72, 294, 353, 355, 365, 488, 495
FatI	CATG	1 cut(s)	363
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	3 cut(s)	233, 246, 393
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	2 cut(s)	97, 441
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	3 cut(s)	246, 321, 378
HhaI	GCGC	2 cut(s)	98, 442
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	2 cut(s)	96, 440
HinP1I	GCGC	2 cut(s)	96, 440
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	3 cut(s)	246, 321, 378
Hpy166II	GTNNAC	2 cut(s)	62, 430
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	1 cut(s)	369
Hpy8I	GTNNAC	2 cut(s)	62, 430
HpyAV	CCTTC	2 cut(s)	211, 416
HpyCH4III	ACNGT	1 cut(s)	477
HpyCH4IV	ACGT	2 cut(s)	265, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 448
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	2 cut(s)	265, 526
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	2 cut(s)	96, 440
Kzo9I	GATC	3 cut(s)	253, 466, 470
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	2 cut(s)	106, 145
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	265, 526
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	255, 468, 472
MboI	GATC	3 cut(s)	253, 466, 470
MboII	GAAGA	2 cut(s)	199, 384
MluCI	AATT	2 cut(s)	67, 259
MmeI	TCCRAC	1 cut(s)	489
MspI	CCGG	3 cut(s)	246, 321, 378
MspR9I	CCNGG	2 cut(s)	144, 164
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	2 cut(s)	144, 164
MwoI	GCNNNNNNNGC	2 cut(s)	164, 448
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	3 cut(s)	253, 466, 470
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	2 cut(s)	450, 483
NspI	RCATGY	1 cut(s)	367
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	482
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	142, 162
PspGI	CCWGG	2 cut(s)	142, 162
PspN4I	GGNNCC	2 cut(s)	450, 483
PspPI	GGNCC	2 cut(s)	449, 482
PspPPI	RGGWCCY	1 cut(s)	482
RsaI	GTAC	3 cut(s)	55, 75, 84
RsaNI	GTAC	3 cut(s)	54, 74, 83
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	253, 466, 470
Sau96I	GGNCC	2 cut(s)	449, 482
ScrFI	CCNGG	2 cut(s)	144, 164
SetI	ASST	7 cut(s)	13, 79, 175, 268, 313, 424, 529
SfaNI	GCATC	2 cut(s)	106, 145
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	482
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	2 cut(s)	67, 259
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	142, 162
TaaI	ACNGT	1 cut(s)	477
TaiI	ACGT	2 cut(s)	268, 529
TaqI	TCGA	1 cut(s)	469
TasI	AATT	2 cut(s)	67, 259
TfiI	GAWTC	1 cut(s)	272
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	1 cut(s)	347
TspRI	CASTG	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	367
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.