Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

26242030 .. 26243818

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATGCAAGTCTACGGAGACCAGAGAGGTCCTTATGGTCCAATGAAGAATTCTATGGGTCCTGTCAAGAATCAAGATCCATTAATAGTTCCTGGTTTGATTGATGCTCTCCTGGCACAAGGTGTGATTTCATTGAAGAAACAAAGCCTGGCACTGAAAGAGGAGAAGGATATTGTGGTAGGATGTGAGTTTTTTGGCATTGATCTAAATCTGCGTCGCGAATCTGTGGTAATCGGCTTGTATGAGGGTGGTCTGCCAATGCAATGTAAAAGTTATGGCCTCCGGTTCAAGTGTGAAGAGCAGCACAGCATCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACTTTTATGCAACTACAAGCATGTGGCTTGTTACTTATGTAAAGGCTGAGGCTGAGGCATTACCTTCTAGTGTAGTTTTATGCGTTGCTGACACCAGTGGTATGGTGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTCGTTCCTGCAGATGAGGATCAGAATAAATGTGCCTTATGCACAGATGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTTCTGTTTACTTGAATGCGCCTCAGGGGCCAACGCTGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCGTGCCAAATGCTGCTCAGAGGGTAGTAGGAAACGTTTGCGCAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

244

Amino Acids

27.6

Weight (kDa)

8.68

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	169 - 235	3.8e-25	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	725
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	1 cut(s)	219
AciI	CCGC	1 cut(s)	355
AclI	AACGTT	1 cut(s)	718
AclWI	GGATC	3 cut(s)	71, 543, 666
AcsI	RAATTY	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	136, 289, 628
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	3 cut(s)	91, 111, 147
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	71, 543, 666
AoxI	GGCC	2 cut(s)	277, 641
ApeKI	GCWGC	2 cut(s)	301, 696
ApoI	RAATTY	1 cut(s)	49
AseI	ATTAAT	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	634, 726
AspS9I	GGNCC	5 cut(s)	29, 38, 59, 641, 674
AvaII	GGWCC	4 cut(s)	29, 38, 59, 674
AxyI	CCTNAGG	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	503
BbvCI	CCTCAGC	2 cut(s)	423, 429
BbvI	GCAGC	2 cut(s)	313, 683
BccI	CCATC	1 cut(s)	649
BciT130I	CCWGG	3 cut(s)	93, 113, 149
BcoDI	GTCTC	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	444, 501
BfmI	CTRYAG	2 cut(s)	525, 678
BglI	GCCNNNNNGGC	1 cut(s)	640
BisI	GCNGC	2 cut(s)	302, 697
BlsI	GCNGC	2 cut(s)	303, 698
Bme1390I	CCNGG	3 cut(s)	93, 113, 149
Bme18I	GGWCC	4 cut(s)	29, 38, 59, 674
BmgT120I	GGNCC	5 cut(s)	29, 38, 59, 641, 674
BmiI	GGNNCC	3 cut(s)	60, 642, 675
BmrFI	CCNGG	3 cut(s)	93, 113, 149
BmsI	GCATC	3 cut(s)	94, 318, 553
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	671
Bpu10I	CCTNAGC	2 cut(s)	423, 429
BsaBI	GATNNNNATC	2 cut(s)	207, 534
BsaI	GGTCTC	1 cut(s)	12
BsaWI	WCCGGW	2 cut(s)	282, 339
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	269
Bse8I	GATNNNNATC	2 cut(s)	207, 534
BseBI	CCWGG	3 cut(s)	93, 113, 149
BseGI	GGATG	4 cut(s)	188, 309, 348, 609
BseJI	GATNNNNATC	2 cut(s)	207, 534
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	4 cut(s)	414, 420, 650, 714
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	313, 683
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	279, 643
BsiSI	CCGG	2 cut(s)	283, 340
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	279, 643
Bso31I	GGTCTC	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	76, 202, 535, 658
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	279, 643
BspCNI	CTCAG	4 cut(s)	415, 421, 649, 713
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	3 cut(s)	60, 642, 675
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	3 cut(s)	71, 543, 666
BspQI	GCTCTTC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	471
BssMI	GATC	4 cut(s)	76, 202, 535, 658
Bst2UI	CCWGG	3 cut(s)	93, 113, 149
Bst4CI	ACNGT	1 cut(s)	669
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	423, 429, 636, 700
BstF5I	GGATG	4 cut(s)	188, 309, 348, 609
BstFNI	CGCG	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	634, 726
BstKTI	GATC	4 cut(s)	79, 205, 538, 661
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	76, 202, 535, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 640
BstNI	CCWGG	3 cut(s)	93, 113, 149
BstNSI	RCATGY	2 cut(s)	329, 400
BstSCI	CCNGG	3 cut(s)	91, 111, 147
BstSFI	CTRYAG	2 cut(s)	525, 678
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	313, 683
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	279, 643
BtsCI	GGATG	4 cut(s)	188, 309, 348, 609
BtsIMutI	CAGTG	2 cut(s)	152, 478
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	359
CciI	TCATGA	1 cut(s)	586
CfoI	GCGC	2 cut(s)	634, 726
Cfr13I	GGNCC	5 cut(s)	29, 38, 59, 641, 674
CseI	GACGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	326, 397, 587
CviJI	RGCY	8 cut(s)	147, 237, 279, 367, 403, 422, 428, 643
CviKI_1	RGCY	8 cut(s)	147, 237, 279, 367, 403, 422, 428, 643
DdeI	CTNAG	4 cut(s)	423, 429, 636, 700
DpnI	GATC	4 cut(s)	78, 204, 537, 660
DpnII	GATC	4 cut(s)	76, 202, 535, 658
DraIII	CACNNNGTG	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	4 cut(s)	29, 38, 59, 674
Eco81I	CCTNAGG	1 cut(s)	636
EcoO109I	RGGNCCY	3 cut(s)	29, 59, 674
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	3 cut(s)	91, 111, 147
FaeI	CATG	3 cut(s)	329, 400, 590
FatI	CATG	3 cut(s)	325, 396, 586
FauI	CCCGC	1 cut(s)	362
FauNDI	CATATG	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	302, 697
FokI	GGATG	4 cut(s)	195, 296, 355, 616
Fsp4HI	GCNGC	2 cut(s)	302, 697
FspBI	CTAG	2 cut(s)	444, 501
FspI	TGCGCA	1 cut(s)	725
GlaI	GCGC	2 cut(s)	633, 725
GluI	GCNGC	2 cut(s)	302, 697
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	2 cut(s)	279, 643
HapII	CCGG	2 cut(s)	283, 340
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	2 cut(s)	634, 726
Hin1II	CATG	3 cut(s)	329, 400, 590
Hin6I	GCGC	2 cut(s)	632, 724
HinP1I	GCGC	2 cut(s)	632, 724
HinfI	GANTC	2 cut(s)	70, 221
HpaII	CCGG	2 cut(s)	283, 340
Hpy166II	GTNNAC	2 cut(s)	13, 622
Hpy188I	TCNGA	2 cut(s)	540, 703
Hpy188III	TCNNGA	5 cut(s)	67, 74, 218, 331, 587
Hpy8I	GTNNAC	2 cut(s)	13, 622
Hpy99I	CGWCG	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	160, 450
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	5 cut(s)	7, 262, 386, 527, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 640
HpyF3I	CTNAG	4 cut(s)	423, 429, 636, 700
HpySE526I	ACGT	1 cut(s)	718
Hsp92II	CATG	3 cut(s)	329, 400, 590
HspAI	GCGC	2 cut(s)	632, 724
Kzo9I	GATC	4 cut(s)	76, 202, 535, 658
LguI	GCTCTTC	1 cut(s)	291
Lsp1109I	GCAGC	2 cut(s)	313, 683
LweI	GCATC	3 cut(s)	94, 318, 553
MaeI	CTAG	2 cut(s)	444, 501
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	3 cut(s)	374, 406, 663
MalI	GATC	4 cut(s)	78, 204, 537, 660
MboI	GATC	4 cut(s)	76, 202, 535, 658
MboII	GAAGA	6 cut(s)	58, 148, 308, 346, 508, 521
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	1 cut(s)	49
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	2 cut(s)	283, 340
MspR9I	CCNGG	3 cut(s)	93, 113, 149
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	3 cut(s)	93, 113, 149
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	113, 640
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	4 cut(s)	76, 202, 535, 658
NlaIII	CATG	3 cut(s)	329, 400, 590
NlaIV	GGNNCC	3 cut(s)	60, 642, 675
NmuCI	GTSAC	1 cut(s)	663
NruI	TCGCGA	1 cut(s)	219
NsbI	TGCGCA	1 cut(s)	725
NspI	RCATGY	2 cut(s)	329, 400
PagI	TCATGA	1 cut(s)	586
PciSI	GCTCTTC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	70, 221
PkrI	GCNGC	2 cut(s)	303, 698
PpuMI	RGGWCCY	3 cut(s)	29, 59, 674
PshBI	ATTAAT	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	718
Psp5II	RGGWCCY	3 cut(s)	29, 59, 674
Psp6I	CCWGG	3 cut(s)	91, 111, 147
PspGI	CCWGG	3 cut(s)	91, 111, 147
PspN4I	GGNNCC	3 cut(s)	60, 642, 675
PspPI	GGNCC	5 cut(s)	29, 38, 59, 641, 674
PspPPI	RGGWCCY	3 cut(s)	29, 59, 674
PstI	CTGCAG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	76
RruI	TCGCGA	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	302, 697
Sau3AI	GATC	4 cut(s)	76, 202, 535, 658
Sau96I	GGNCC	5 cut(s)	29, 38, 59, 641, 674
ScrFI	CCNGG	3 cut(s)	93, 113, 149
SetI	ASST	5 cut(s)	31, 124, 442, 616, 721
SfaNI	GCATC	3 cut(s)	94, 318, 553
SfcI	CTRYAG	2 cut(s)	525, 678
SinI	GGWCC	4 cut(s)	29, 38, 59, 674
SmiMI	CAYNNNNRTG	1 cut(s)	314
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	2 cut(s)	444, 501
StyD4I	CCNGG	3 cut(s)	91, 111, 147
TaaI	ACNGT	1 cut(s)	669
TaiI	ACGT	1 cut(s)	721
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	70, 221
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	2 cut(s)	159, 478
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	2 cut(s)	301, 696
Tsp45I	GTSAC	1 cut(s)	663
TspDTI	ATGAA	3 cut(s)	59, 120, 522
TspGWI	ACGGA	2 cut(s)	30, 674
TspRI	CASTG	2 cut(s)	159, 478
VpaK11BI	GGWCC	4 cut(s)	29, 38, 59, 674
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	2 cut(s)	329, 400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	2 cut(s)	444, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.