Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

25059611 .. 25060717

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATGCAAGTCTACGGAGACCAGAGAGGTCCTTATGGTCCAATGAAGAATTCTATGGGTCCTGTCAAGAATCAAGATCCATGTAAGCCACGCTATATGCCTTTTCCGGCTAATCACTGGAACCAGGTGCCGCCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATCTCCACCAACCCTGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAGAACGGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACTTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGCAGAAGCTGTTTTACCTGCTGCTGACACCAGTGGCGCGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTTGTTCCTGCGGACGAGGATCAAAGTAAATGCGCCTTATGCAGAGACGCTTTTGTTGAGTTTTATAGTCATGAGACAGATGAGTGGATGTATAAAGGTGCGGTTTACTTGAATGCGCCTCAGGGGCCAGCACCGGAGATGGGTCGATCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGAAGTAGGAAACGTCTGCGGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

221

Amino Acids

25.1

Weight (kDa)

9.4

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	145 - 211	4.5e-28	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	1 cut(s)	407
AciI	CCGC	7 cut(s)	131, 310, 407, 410, 455, 545, 652
AclWI	GGATC	2 cut(s)	71, 471
AcsI	RAATTY	2 cut(s)	49, 175
AfiI	CCNNNNNNNGG	4 cut(s)	137, 200, 584, 624
AgsI	TTSAA	2 cut(s)	244, 556
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	123, 198
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	228, 377
AluI	AGCT	2 cut(s)	228, 377
Alw26I	GTCTC	3 cut(s)	12, 483, 512
AlwI	GGATC	2 cut(s)	71, 471
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	232, 569
ApeKI	GCWGC	2 cut(s)	264, 389
ApoI	RAATTY	2 cut(s)	49, 175
AspLEI	GCGC	3 cut(s)	407, 479, 562
AspS9I	GGNCC	5 cut(s)	29, 38, 59, 569, 602
AvaII	GGWCC	4 cut(s)	29, 38, 59, 602
AxyI	CCTNAGG	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	127
BarI	GAAGNNNNNNTAC	2 cut(s)	366, 398
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	276, 376
BccI	CCATC	2 cut(s)	193, 577
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	125, 200
BcoDI	GTCTC	3 cut(s)	12, 483, 512
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	568
BisI	GCNGC	4 cut(s)	131, 265, 390, 408
BlsI	GCNGC	4 cut(s)	132, 266, 391, 409
Bme1390I	CCNGG	2 cut(s)	125, 200
Bme18I	GGWCC	4 cut(s)	29, 38, 59, 602
BmgT120I	GGNCC	5 cut(s)	29, 38, 59, 569, 602
BmiI	GGNNCC	5 cut(s)	60, 122, 129, 570, 603
BmrFI	CCNGG	2 cut(s)	125, 200
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	198, 199, 212
BsaWI	WCCGGW	3 cut(s)	237, 294, 577
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 200, 584, 624
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	122, 399
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	125, 200
BseDI	CCNNGG	3 cut(s)	198, 199, 212
BseGI	GGATG	2 cut(s)	303, 537
BseLI	CCNNNNNNNGG	4 cut(s)	137, 200, 584, 624
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	2 cut(s)	122, 399
BseXI	GCAGC	2 cut(s)	276, 376
Bsh1236I	CGCG	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	234, 571
BshNI	GGYRCC	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	5 cut(s)	107, 134, 238, 295, 578
BslI	CCNNNNNNNGG	4 cut(s)	137, 200, 584, 624
BsmAI	GTCTC	3 cut(s)	12, 483, 512
BsmBI	CGTCTC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	234, 571
Bso31I	GGTCTC	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	76, 463, 590
BspACI	CCGC	7 cut(s)	131, 310, 407, 410, 455, 545, 652
BspANI	GGCC	2 cut(s)	234, 571
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	5 cut(s)	60, 122, 129, 570, 603
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	2 cut(s)	71, 471
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	122, 399
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	198, 199, 212
BssMI	GATC	3 cut(s)	76, 463, 590
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	125, 200
Bst4CI	ACNGT	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	314, 573
BstDEI	CTNAG	1 cut(s)	564
BstF5I	GGATG	2 cut(s)	303, 537
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	3 cut(s)	407, 479, 562
BstKTI	GATC	3 cut(s)	79, 466, 593
BstMAI	GTCTC	3 cut(s)	12, 483, 512
BstMBI	GATC	3 cut(s)	76, 463, 590
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	483, 568
BstNI	CCWGG	2 cut(s)	125, 200
BstNSI	RCATGY	2 cut(s)	284, 355
BstSCI	CCNGG	2 cut(s)	123, 198
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	276, 376
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	234, 571
BtsCI	GGATG	2 cut(s)	303, 537
BtsIMutI	CAGTG	2 cut(s)	115, 406
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	314, 573
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	3 cut(s)	407, 479, 562
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	5 cut(s)	29, 38, 59, 569, 602
CseI	GACGC	1 cut(s)	500
CsiI	ACCWGGT	1 cut(s)	123
CviAII	CATG	5 cut(s)	81, 281, 352, 515, 614
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	3 cut(s)	78, 465, 592
DpnII	GATC	3 cut(s)	76, 463, 590
EciI	GGCGGA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	4 cut(s)	29, 38, 59, 602
Eco81I	CCTNAGG	1 cut(s)	564
EcoO109I	RGGNCCY	3 cut(s)	29, 59, 602
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	123, 198
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	5 cut(s)	84, 284, 355, 518, 617
FatI	CATG	5 cut(s)	80, 280, 351, 514, 613
FauI	CCCGC	1 cut(s)	317
FauNDI	CATATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	131, 265, 390, 408
FokI	GGATG	2 cut(s)	310, 544
Fsp4HI	GCNGC	4 cut(s)	131, 265, 390, 408
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	3 cut(s)	406, 478, 561
GluI	GCNGC	4 cut(s)	131, 265, 390, 408
HaeIII	GGCC	2 cut(s)	234, 571
HapII	CCGG	5 cut(s)	107, 134, 238, 295, 578
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	3 cut(s)	407, 479, 562
Hin1II	CATG	5 cut(s)	84, 284, 355, 518, 617
Hin6I	GCGC	3 cut(s)	405, 477, 560
HinP1I	GCGC	3 cut(s)	405, 477, 560
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	5 cut(s)	107, 134, 238, 295, 578
Hpy166II	GTNNAC	2 cut(s)	13, 550
Hpy188I	TCNGA	1 cut(s)	631
Hpy188III	TCNNGA	4 cut(s)	67, 74, 286, 515
Hpy8I	GTNNAC	2 cut(s)	13, 550
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	4 cut(s)	7, 341, 371, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	483, 568
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	5 cut(s)	84, 284, 355, 518, 617
HspAI	GCGC	3 cut(s)	405, 477, 560
Kzo9I	GATC	3 cut(s)	76, 463, 590
Lsp1109I	GCAGC	2 cut(s)	276, 376
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	123
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	2 cut(s)	329, 361
MalI	GATC	3 cut(s)	78, 465, 592
MboI	GATC	3 cut(s)	76, 463, 590
MboII	GAAGA	6 cut(s)	58, 152, 263, 301, 436, 449
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	3 cut(s)	49, 155, 175
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	8 cut(s)	20, 177, 245, 334, 454, 573, 625, 648
MspI	CCGG	5 cut(s)	107, 134, 238, 295, 578
MspR9I	CCNGG	2 cut(s)	125, 200
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	2 cut(s)	125, 200
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	483, 568
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	3 cut(s)	76, 463, 590
NlaIII	CATG	5 cut(s)	84, 284, 355, 518, 617
NlaIV	GGNNCC	5 cut(s)	60, 122, 129, 570, 603
NspI	RCATGY	2 cut(s)	284, 355
PagI	TCATGA	1 cut(s)	514
PasI	CCCWGGG	1 cut(s)	199
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	624
PkrI	GCNGC	4 cut(s)	132, 266, 391, 409
PpuMI	RGGWCCY	3 cut(s)	29, 59, 602
Psp5II	RGGWCCY	3 cut(s)	29, 59, 602
Psp6I	CCWGG	2 cut(s)	123, 198
PspGI	CCWGG	2 cut(s)	123, 198
PspN4I	GGNNCC	5 cut(s)	60, 122, 129, 570, 603
PspPI	GGNCC	5 cut(s)	29, 38, 59, 569, 602
PspPPI	RGGWCCY	3 cut(s)	29, 59, 602
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	76
SatI	GCNGC	4 cut(s)	131, 265, 390, 408
Sau3AI	GATC	3 cut(s)	76, 463, 590
Sau96I	GGNCC	5 cut(s)	29, 38, 59, 569, 602
ScrFI	CCNGG	2 cut(s)	125, 200
SetI	ASST	8 cut(s)	31, 129, 169, 230, 379, 388, 544, 649
SexAI	ACCWGGT	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	4 cut(s)	29, 38, 59, 602
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	3 cut(s)	49, 155, 175
SsiI	CCGC	7 cut(s)	131, 310, 407, 410, 455, 545, 652
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	123, 198
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	2 cut(s)	169, 589
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	49, 155, 175
TauI	GCSGC	2 cut(s)	133, 410
TfiI	GAWTC	1 cut(s)	70
TscAI	CASTG	2 cut(s)	122, 406
TseI	GCWGC	2 cut(s)	264, 389
TspDTI	ATGAA	2 cut(s)	59, 450
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	122, 406
Van91I	CCANNNNNTGG	1 cut(s)	624
VpaK11BI	GGWCC	4 cut(s)	29, 38, 59, 602
XapI	RAATTY	2 cut(s)	49, 175
XceI	RCATGY	2 cut(s)	284, 355
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.