Rmu_sc0000431.1_g000030

pcf11p-similar protein 4

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000431.1
Physical Location & Seq
Reverse (-)
155845 .. 160271
4427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000431.1_g000030.1.cds

Sequence Viewer

Length: 1242 bp
atggaaacatttacaagaaggaaaccaactgatgagatcttcattggggaaatgagattaagtcaatgggttgcaaatcacctagttgcaaatgcgatagctgatgttgtggatgctactttacttggaaccgaggaggatcatgagttcgtgagcaagagggagtgcttatcatctattatgagattagctattgcttgttcagcagaatcaccggaagagaggataaacatgcaagaggctgtagccatgctcaaaacaatcaagatcaagttttcaaagcacgctgcagcaggaggtgaggtgttgaactgtcgtcctgtttggtgcattgaggaggaggacctcatgaggttcatgattgaggaagaggtggaagttgcatttttgctgaagagctctaaaagattagctgcccccacagagttaatctcaattgaactaaatctgatgctggatgatcagttcaatcatagtttagcaaattgtgtccctcatcgtctaccaccgcaaggcgtaactccggttaaaaatgctggtccactagtctctggtttgcttgggtctctaatggcacaaggtgtgatctcatcgaaaaaccaaagtagaggaggacaggagggtcctagttcactaaattctgtatctcttgtaccacagcaaggtggattgcctgttcaaaatgttgctgctgatgttccagtagtagttcctggccttgatctaaatctgcgtcgcgaatctgtggtaatcggcttgtatgagggtggtctgccaaggcaatgtaaaagctgtggcctccggtttaagtgtgaagaacagcacagcagccatatggattggcaagtcaagaagaaccatatgtccaaaacccgcaagcagaagccctttcgtaacttttatgcaactacaagcatgtggcttgttactgatgcaaaggctgaggctgaggcattactttctggtgtagttttgcctgctgctgacaccagtggcatggcggaaaagaaaaggaagactagtgatgaagaaatggttgttcctgtggatgaggatcaaattaaatgtggcttatgcagagatgcttttgttgagttttattgtcatgagacagacgagtggatgtataaaggtgttgtttacttgaatgcgcctcagaggccagcgcctgaccagcgcctgagatgtggatcgatcactgttgggtcctgtagtccatgccaaatgctggtcggagggtag

Protein Analysis

413

Amino Acids

45.55

Weight (kDa)

5.71

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 621
AccB7I CCANNNNNTGG 1 cut(s) 1228
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 738
AciI CCGC 3 cut(s) 509, 874, 1001
AclWI GGATC 3 cut(s) 147, 1062, 1198
AcsI RAATTY 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 581
AfaI GTAC 1 cut(s) 654
AfiI CCNNNNNNNGG 3 cut(s) 512, 662, 1228
AgsI TTSAA 6 cut(s) 279, 310, 440, 469, 680, 1147
AhlI ACTAGT 2 cut(s) 544, 1019
AjnI CCWGG 1 cut(s) 712
AloI GAACNNNNNNTCC 8 cut(s) 131, 163, 449, 481, 660, 692, 848, 880
AluBI AGCT 5 cut(s) 101, 191, 399, 413, 792
AluI AGCT 5 cut(s) 101, 191, 399, 413, 792
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 3 cut(s) 553, 570, 1103
AlwI GGATC 3 cut(s) 147, 1062, 1198
AlwNI CAGNNNCTG 2 cut(s) 1169, 1180
AoxI GGCC 3 cut(s) 715, 796, 1160
ApeKI GCWGC 6 cut(s) 287, 290, 413, 689, 828, 980
ApoI RAATTY 1 cut(s) 637
AspLEI GCGC 3 cut(s) 1153, 1168, 1179
AspS9I GGNCC 4 cut(s) 343, 539, 623, 1206
AsuHPI GGTGA 3 cut(s) 71, 204, 311
AvaII GGWCC 4 cut(s) 343, 539, 623, 1206
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 1022
Bbv12I GWGCWC 1 cut(s) 401
BbvCI CCTCAGC 2 cut(s) 942, 948
BbvI GCAGC 6 cut(s) 274, 302, 400, 676, 840, 967
BciT130I CCWGG 1 cut(s) 714
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 3 cut(s) 553, 570, 1103
BcuI ACTAGT 2 cut(s) 544, 1019
BfaI CTAG 4 cut(s) 83, 545, 627, 1020
BfmI CTRYAG 3 cut(s) 243, 288, 1210
BfoI RGCGCY 2 cut(s) 1169, 1180
BglI GCCNNNNNGGC 1 cut(s) 1159
BglII AGATCT 1 cut(s) 36
BisI GCNGC 6 cut(s) 288, 291, 414, 690, 829, 981
BlsI GCNGC 6 cut(s) 289, 292, 415, 691, 830, 982
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 4 cut(s) 343, 539, 623, 1206
BmgT120I GGNCC 4 cut(s) 343, 539, 623, 1206
BmiI GGNNCC 3 cut(s) 130, 624, 1207
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 4 cut(s) 103, 441, 922, 1072
BpiI GAAGAC 1 cut(s) 1022
BplI GAGNNNNNCTC 2 cut(s) 416, 448
Bpu10I CCTNAGC 2 cut(s) 942, 948
Bsa29I ATCGAT 1 cut(s) 1193
BsaBI GATNNNNATC 3 cut(s) 726, 1053, 1189
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 2 cut(s) 132, 776
BsaWI WCCGGW 3 cut(s) 214, 523, 801
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 512, 662, 1228
Bse1I ACTGG 2 cut(s) 701, 990
Bse3DI GCAATG 1 cut(s) 788
Bse8I GATNNNNATC 3 cut(s) 726, 1053, 1189
BseBI CCWGG 1 cut(s) 714
BseCI ATCGAT 1 cut(s) 1193
BseDI CCNNGG 2 cut(s) 132, 776
BseGI GGATG 4 cut(s) 118, 463, 1054, 1128
BseJI GATNNNNATC 3 cut(s) 726, 1053, 1189
BseLI CCNNNNNNNGG 3 cut(s) 512, 662, 1228
BseMI GCAATG 1 cut(s) 788
BseMII CTCAG 4 cut(s) 933, 939, 1169, 1172
BseNI ACTGG 2 cut(s) 701, 990
BseRI GAGGAG 4 cut(s) 149, 350, 353, 624
BseXI GCAGC 6 cut(s) 274, 302, 400, 676, 840, 967
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 3 cut(s) 717, 798, 1162
BshVI ATCGAT 1 cut(s) 1193
BsiHKAI GWGCWC 1 cut(s) 401
BsiSI CCGG 3 cut(s) 215, 524, 802
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 3 cut(s) 512, 662, 1228
BsmAI GTCTC 3 cut(s) 553, 570, 1103
BsmFI GGGAC 1 cut(s) 476
BsmI GAATGC 1 cut(s) 1153
BsnI GGCC 3 cut(s) 717, 798, 1162
Bso31I GGTCTC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
Bsp68I TCGCGA 1 cut(s) 738
BspACI CCGC 3 cut(s) 509, 874, 1001
BspANI GGCC 3 cut(s) 717, 798, 1162
BspCNI CTCAG 4 cut(s) 934, 940, 1168, 1173
BspDI ATCGAT 1 cut(s) 1193
BspFNI CGCG 1 cut(s) 738
BspHI TCATGA 4 cut(s) 142, 348, 357, 1105
BspLI GGNNCC 3 cut(s) 130, 624, 1207
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 3 cut(s) 147, 1062, 1198
BspQI GCTCTTC 1 cut(s) 389
BspTNI GGTCTC 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 788
BsrI ACTGG 2 cut(s) 701, 990
BssECI CCNNGG 2 cut(s) 132, 776
BssMI GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
BssT1I CCWWGG 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 2 cut(s) 314, 1201
Bst6I CTCTTC 3 cut(s) 213, 363, 389
BstC8I GCNNGC 4 cut(s) 285, 878, 978, 1164
BstDEI CTNAG 4 cut(s) 942, 948, 1155, 1181
BstF5I GGATG 4 cut(s) 118, 463, 1054, 1128
BstFNI CGCG 1 cut(s) 738
BstH2I RGCGCY 2 cut(s) 1169, 1180
BstHHI GCGC 3 cut(s) 1153, 1168, 1179
BstKTI GATC 9 cut(s) 39, 142, 270, 463, 588, 724, 1057, 1193, 1197
BstMAI GTCTC 3 cut(s) 553, 570, 1103
BstMBI GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
BstMWI GCNNNNNNNGC 3 cut(s) 203, 1159, 1174
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 2 cut(s) 235, 919
BstSCI CCNGG 1 cut(s) 712
BstSFI CTRYAG 3 cut(s) 243, 288, 1210
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 6 cut(s) 274, 302, 400, 676, 840, 967
BstV2I GAAGAC 1 cut(s) 1022
BstX2I RGATCY 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 997
BstYI RGATCY 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 1193
BsuRI GGCC 3 cut(s) 717, 798, 1162
BsuTUI ATCGAT 1 cut(s) 1193
BtsCI GGATG 4 cut(s) 118, 463, 1054, 1128
BtsIMutI CAGTG 2 cut(s) 997, 1197
BtuMI TCGCGA 1 cut(s) 738
Cac8I GCNNGC 4 cut(s) 285, 878, 978, 1164
CaiI CAGNNNCTG 2 cut(s) 1169, 1180
CciI TCATGA 4 cut(s) 142, 348, 357, 1105
CfoI GCGC 3 cut(s) 1153, 1168, 1179
Cfr13I GGNCC 4 cut(s) 343, 539, 623, 1206
ClaI ATCGAT 1 cut(s) 1193
CseI GACGC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 653
CviAII CATG 9 cut(s) 143, 232, 250, 349, 358, 916, 997, 1106, 1218
CviQI GTAC 1 cut(s) 653
DdeI CTNAG 4 cut(s) 942, 948, 1155, 1181
DpnI GATC 9 cut(s) 38, 141, 269, 462, 587, 723, 1056, 1192, 1196
DpnII GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
DraIII CACNNNGTG 1 cut(s) 581
DrdI GACNNNNNNGTC 1 cut(s) 621
DseDI GACNNNNNNGTC 1 cut(s) 621
Eam1104I CTCTTC 3 cut(s) 213, 363, 389
EarI CTCTTC 3 cut(s) 213, 363, 389
EciI GGCGGA 1 cut(s) 1016
Ecl136II GAGCTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 776
Eco24I GRGCYC 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 570
Eco47I GGWCC 4 cut(s) 343, 539, 623, 1206
Eco53kI GAGCTC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 413
EcoICRI GAGCTC 1 cut(s) 399
EcoO109I RGGNCCY 3 cut(s) 343, 623, 1206
EcoRII CCWGG 1 cut(s) 712
EcoT14I CCWWGG 1 cut(s) 776
EcoT38I GRGCYC 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 776
FaeI CATG 9 cut(s) 146, 235, 253, 352, 361, 919, 1000, 1109, 1221
FaqI GGGAC 1 cut(s) 476
FatI CATG 9 cut(s) 142, 231, 249, 348, 357, 915, 996, 1105, 1217
FauI CCCGC 1 cut(s) 881
FauNDI CATATG 2 cut(s) 834, 861
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 6 cut(s) 288, 291, 414, 690, 829, 981
FokI GGATG 4 cut(s) 125, 470, 1061, 1135
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 6 cut(s) 288, 291, 414, 690, 829, 981
FspBI CTAG 4 cut(s) 83, 545, 627, 1020
GlaI GCGC 3 cut(s) 1152, 1167, 1178
GluI GCNGC 6 cut(s) 288, 291, 414, 690, 829, 981
HaeII RGCGCY 2 cut(s) 1169, 1180
HaeIII GGCC 3 cut(s) 717, 798, 1162
HapII CCGG 3 cut(s) 215, 524, 802
HgaI GACGC 1 cut(s) 722
HhaI GCGC 3 cut(s) 1153, 1168, 1179
Hin1II CATG 9 cut(s) 146, 235, 253, 352, 361, 919, 1000, 1109, 1221
Hin6I GCGC 3 cut(s) 1151, 1166, 1177
HinP1I GCGC 3 cut(s) 1151, 1166, 1177
HinfI GANTC 2 cut(s) 209, 740
HpaII CCGG 3 cut(s) 215, 524, 802
HphI GGTGA 3 cut(s) 71, 204, 311
Hpy166II GTNNAC 4 cut(s) 503, 542, 632, 1141
Hpy188I TCNGA 3 cut(s) 450, 1158, 1235
Hpy188III TCNNGA 8 cut(s) 143, 151, 265, 349, 358, 737, 850, 1106
Hpy8I GTNNAC 4 cut(s) 503, 542, 632, 1141
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 2 cut(s) 314, 1201
HpyCH4V TGCA 9 cut(s) 74, 89, 235, 290, 330, 383, 905, 935, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 1159, 1174
HpyF3I CTNAG 4 cut(s) 942, 948, 1155, 1181
Hsp92II CATG 9 cut(s) 146, 235, 253, 352, 361, 919, 1000, 1109, 1221
HspAI GCGC 3 cut(s) 1151, 1166, 1177
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
LguI GCTCTTC 1 cut(s) 389
Lsp1109I GCAGC 6 cut(s) 274, 302, 400, 676, 840, 967
LweI GCATC 4 cut(s) 103, 441, 922, 1072
MaeI CTAG 4 cut(s) 83, 545, 627, 1020
MaeIII GTNAC 3 cut(s) 517, 893, 925
MalI GATC 9 cut(s) 38, 141, 269, 462, 587, 723, 1056, 1192, 1196
MboI GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
MboII GAAGA 8 cut(s) 31, 230, 380, 406, 827, 865, 1027, 1040
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 4 cut(s) 435, 484, 637, 1059
MmeI TCCRAC 1 cut(s) 1213
MseI TTAA 5 cut(s) 59, 428, 528, 807, 1062
MspI CCGG 3 cut(s) 215, 524, 802
MspR9I CCNGG 1 cut(s) 714
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 1153
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 3 cut(s) 203, 1159, 1174
NdeI CATATG 2 cut(s) 834, 861
NdeII GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
NlaIII CATG 9 cut(s) 146, 235, 253, 352, 361, 919, 1000, 1109, 1221
NlaIV GGNNCC 3 cut(s) 130, 624, 1207
NruI TCGCGA 1 cut(s) 738
NspI RCATGY 2 cut(s) 235, 919
PagI TCATGA 4 cut(s) 142, 348, 357, 1105
PciSI GCTCTTC 1 cut(s) 389
PctI GAATGC 1 cut(s) 1153
PfeI GAWTC 2 cut(s) 209, 740
PflMI CCANNNNNTGG 1 cut(s) 1228
PkrI GCNGC 6 cut(s) 289, 292, 415, 691, 830, 982
PpuMI RGGWCCY 3 cut(s) 343, 623, 1206
Psp124BI GAGCTC 1 cut(s) 401
Psp5II RGGWCCY 3 cut(s) 343, 623, 1206
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 3 cut(s) 130, 624, 1207
PspPI GGNCC 4 cut(s) 343, 539, 623, 1206
PspPPI RGGWCCY 3 cut(s) 343, 623, 1206
PstI CTGCAG 1 cut(s) 292
PstNI CAGNNNCTG 2 cut(s) 1169, 1180
PsuI RGATCY 1 cut(s) 36
RruI TCGCGA 1 cut(s) 738
RsaI GTAC 1 cut(s) 654
RsaNI GTAC 1 cut(s) 653
SacI GAGCTC 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 5 cut(s) 59, 428, 528, 807, 1062
SatI GCNGC 6 cut(s) 288, 291, 414, 690, 829, 981
Sau3AI GATC 9 cut(s) 36, 139, 267, 460, 585, 721, 1054, 1190, 1194
Sau96I GGNCC 4 cut(s) 343, 539, 623, 1206
ScrFI CCNGG 1 cut(s) 714
SduI GDGCHC 1 cut(s) 401
SfaNI GCATC 4 cut(s) 103, 441, 922, 1072
SfcI CTRYAG 3 cut(s) 243, 288, 1210
SinI GGWCC 4 cut(s) 343, 539, 623, 1206
SpeI ACTAGT 2 cut(s) 544, 1019
Sse9I AATT 4 cut(s) 435, 484, 637, 1059
SsiI CCGC 3 cut(s) 509, 874, 1001
SspMI CTAG 4 cut(s) 83, 545, 627, 1020
SstI GAGCTC 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 712
StyI CCWWGG 1 cut(s) 776
TaaI ACNGT 2 cut(s) 314, 1201
TaqI TCGA 2 cut(s) 593, 1193
TasI AATT 4 cut(s) 435, 484, 637, 1059
TfiI GAWTC 2 cut(s) 209, 740
Tru1I TTAA 5 cut(s) 59, 428, 528, 807, 1062
Tru9I TTAA 5 cut(s) 59, 428, 528, 807, 1062
TscAI CASTG 2 cut(s) 997, 1204
TseI GCWGC 6 cut(s) 287, 290, 413, 689, 828, 980
TspDTI ATGAA 3 cut(s) 31, 346, 1041
TspRI CASTG 2 cut(s) 997, 1204
Van91I CCANNNNNTGG 1 cut(s) 1228
VpaK11BI GGWCC 4 cut(s) 343, 539, 623, 1206
XapI RAATTY 1 cut(s) 637
XceI RCATGY 2 cut(s) 235, 919
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 4 cut(s) 83, 545, 627, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.