AT2G02120

Belongs to the DEFL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001620
Physical Location & Seq
Forward (+)
538250 .. 539123
874 bp
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UTR
Exon/CDS
Intron
AT2G02120.1

Sequence Viewer

Length: 234 bp
ATGAAGTTCTCTATGCGTTTGATCTCAGCCGTTCTTTTCTTGGTGATGATATTCGTCGCCACAGGGATGGGTCCAGTCACGGTCGAGGCACGCACGTGTGCGTCGCAGAGCCAAAGATTCAAGGGTAAATGCGTGAGCGATACAAACTGCGAAAACGTGTGCCACAACGAAGGCTTCCCCGGAGGTGATTGCCGTGGATTCCGTCGTCGTTGCTTCTGCACCAGAAATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

77

Amino Acids

8.58

Weight (kDa)

9.14

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 31 - 77 2.9e-19 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 96
AflIII ACRYGT 2 cut(s) 95, 156
AgsI TTSAA 1 cut(s) 121
AleI CACNNNNGTG 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 2 cut(s) 55, 197
AvaII GGWCC 1 cut(s) 71
BbrPI CACGTG 1 cut(s) 96
BccI CCATC 1 cut(s) 61
BceAI ACGGC 2 cut(s) 14, 177
BcnI CCSGG 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 178, 193
Bse1I ACTGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 178, 193
BseGI GGATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 202
Bsh1285I CGRYCG 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 180
Bsp143I GATC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 178, 193
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMCI CGRYCG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 90
CviJI RGCY 3 cut(s) 29, 111, 174
CviKI_1 RGCY 3 cut(s) 29, 111, 174
DdeI CTNAG 1 cut(s) 25
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 71
Eco72I CACGTG 1 cut(s) 96
FaiI YATR 1 cut(s) 14
FokI GGATG 1 cut(s) 79
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 90
HinfI GANTC 2 cut(s) 117, 198
HpaII CCGG 1 cut(s) 180
HphI GGTGA 2 cut(s) 55, 197
Hpy99I CGWCG 4 cut(s) 59, 106, 207, 210
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 2 cut(s) 95, 156
HpyCH4V TGCA 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 2 cut(s) 95, 156
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 3 cut(s) 48, 87, 193
MaeII ACGT 2 cut(s) 95, 156
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MluCI AATT 1 cut(s) 226
MnlI CCTC 2 cut(s) 79, 176
MslI CAYNNNNRTG 2 cut(s) 65, 94
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 180
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 76
OliI CACNNNNGTG 1 cut(s) 94
PfeI GAWTC 2 cut(s) 117, 198
PmaCI CACGTG 1 cut(s) 96
PmlI CACGTG 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 96
PspCI CACGTG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 71
RseI CAYNNNNRTG 2 cut(s) 65, 94
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 180
SetI ASST 3 cut(s) 98, 159, 187
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 65, 94
Sse9I AATT 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 2 cut(s) 98, 159
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 226
TfiI GAWTC 2 cut(s) 117, 198
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.