Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Forward (+)

32095018 .. 32095712

Gene Structure 695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G341500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGAGCGCTCCATGCGTTTATTTTCAACTGCCTTCGTCTTCTTTCTGCTTCTGGCAGCTGCTGGGATGATGGGGCCAATGGTTGCTGAGGCTAGGACCTGTGAGTCTCAGAGTAATCGGTTCAAGGGAACTTGCGTGAGTACAAGCAACTGTGCATCTGTTTGCCAAACTGAGGGCTTCCCTGGTGGCCATTGTCGTGGCTTTCGCCGCAGATGCTTTTGCACTAAACATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

79

Amino Acids

8.61

Weight (kDa)

9.16

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AciI	CCGC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	187
AfaI	GTAC	1 cut(s)	142
AfeI	AGCGCT	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	27, 124
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	2 cut(s)	74, 187
ApeKI	GCWGC	2 cut(s)	56, 59
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	74, 96
AvaII	GGWCC	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	46, 68
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	10
BisI	GCNGC	3 cut(s)	57, 60, 208
BlsI	GCNGC	3 cut(s)	58, 61, 209
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	74, 96
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	164, 203
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	78, 122, 162
BseXI	GCAGC	2 cut(s)	46, 68
BseYI	CCCAGC	1 cut(s)	62
BshFI	GGCC	2 cut(s)	76, 189
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	76, 189
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	2 cut(s)	76, 189
BspCNI	CTCAG	3 cut(s)	79, 121, 163
BspLI	GGNNCC	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	152
BstDEI	CTNAG	3 cut(s)	87, 108, 171
BstF5I	GGATG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 207, 213
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	46, 68
BstV2I	GAAGAC	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	76, 189
BtsCI	GGATG	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	74, 96
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	59, 76, 92, 177, 189, 201
CviKI_1	RGCY	6 cut(s)	59, 76, 92, 177, 189, 201
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	87, 108, 171
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	57, 60, 208
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	57, 60, 208
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	57, 60, 208
GsaI	CCCAGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	76, 189
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	155, 222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 207, 213
HpyF3I	CTNAG	3 cut(s)	87, 108, 171
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	4, 14
LpnPI	CCDG	5 cut(s)	38, 48, 112, 168, 195
Lsp1109I	GCAGC	2 cut(s)	46, 68
LweI	GCATC	2 cut(s)	164, 203
MaeI	CTAG	1 cut(s)	93
MboII	GAAGA	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	82, 166
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	235
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	13, 207, 213
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	58, 61, 209
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	74, 96
PspPPI	RGGWCCY	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	235
SatI	GCNGC	3 cut(s)	57, 60, 208
Sau96I	GGNCC	2 cut(s)	74, 96
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	2 cut(s)	61, 101
SfaNI	GCATC	2 cut(s)	164, 203
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	195
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	235
Tru9I	TTAA	1 cut(s)	235
TseI	GCWGC	2 cut(s)	56, 59
VpaK11BI	GGWCC	1 cut(s)	96
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.