Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Reverse (-)

1030046 .. 1031621

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGAGTTTCATGCGTTTGTTTTCGACTTTCTTCTTCGCTCTCTGGCTTCTGGTGGCTACAGCTGGGATAGGACCAAATGTAACGGTTGCTGAGGCTAGAACTTGTGAGAGTCAGAGCCTCAAGTACGAGGGAATGTGCTTGAGAGAGAGCCACTGTGCATCTGTTTGCCAAACTGAGGGGTACAGTGGAGGCGACTGCCACGGGATAGGGCCAAATGTAATGGTTGCTGAGGCCAGAAAATGTGAGAGTCAGAGCCACAAGTTCGAGGGAATTTGCTTGAAACAGAGCAATTGTGCATCTATTTGCAAAACTGAGGGTTATAGTGGAGGCAACTGCCGCGGTTTTCGCCGCAGATGCTTCTGCACCAAAGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

127

Amino Acids

13.82

Weight (kDa)

7.95

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	34 - 70	2e-12	Gamma-thionin family
Gamma-thionin	PF00304	80 - 126	1.7e-16	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	342
AciI	CCGC	3 cut(s)	340, 342, 352
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	2 cut(s)	128, 185
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AoxI	GGCC	2 cut(s)	212, 234
ApoI	RAATTY	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	74, 212
AvaII	GGWCC	1 cut(s)	74
BbvCI	CCTCAGC	2 cut(s)	93, 231
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	340, 352
BlsI	GCNGC	2 cut(s)	341, 353
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	74, 212
BmsI	GCATC	3 cut(s)	170, 308, 347
Bpu10I	CCTNAGC	2 cut(s)	93, 231
BpuEI	CTTGAG	2 cut(s)	107, 163
BsaJI	CCNNGG	2 cut(s)	202, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	202, 340
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	4 cut(s)	84, 168, 222, 306
BseYI	CCCAGC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	214, 236
BslI	CCNNNNNNNGG	1 cut(s)	178
BsnI	GGCC	2 cut(s)	214, 236
BspACI	CCGC	3 cut(s)	340, 342, 352
BspANI	GGCC	2 cut(s)	214, 236
BspCNI	CTCAG	4 cut(s)	85, 169, 223, 307
BspFNI	CGCG	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	202, 340
Bst4CI	ACNGT	3 cut(s)	88, 158, 188
BstDEI	CTNAG	4 cut(s)	93, 177, 231, 315
BstDSI	CCRYGG	2 cut(s)	202, 340
BstFNI	CGCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	3 cut(s)	339, 348, 357
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	214, 236
BtgI	CCRYGG	2 cut(s)	202, 340
BtsIMutI	CAGTG	2 cut(s)	154, 193
Cfr13I	GGNCC	2 cut(s)	74, 212
Cfr42I	CCGCGG	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	127, 184
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	9 cut(s)	49, 59, 65, 98, 120, 153, 214, 236, 258
CviKI_1	RGCY	9 cut(s)	49, 59, 65, 98, 120, 153, 214, 236, 258
CviQI	GTAC	2 cut(s)	127, 184
DdeI	CTNAG	4 cut(s)	93, 177, 231, 315
Eco47I	GGWCC	1 cut(s)	74
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 324
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	340, 352
Fsp4HI	GCNGC	2 cut(s)	340, 352
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	2 cut(s)	340, 352
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	214, 236
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	2 cut(s)	112, 250
Hpy188I	TCNGA	2 cut(s)	117, 255
HpyCH4III	ACNGT	3 cut(s)	88, 158, 188
HpyCH4V	TGCA	4 cut(s)	161, 299, 309, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	339, 348, 357
HpyF3I	CTNAG	4 cut(s)	93, 177, 231, 315
Hsp92II	CATG	1 cut(s)	16
KspI	CCGCGG	1 cut(s)	343
LpnPI	CCDG	4 cut(s)	31, 38, 51, 250
LweI	GCATC	3 cut(s)	170, 308, 347
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	25, 28
MfeI	CAATTG	1 cut(s)	292
MluCI	AATT	2 cut(s)	273, 292
MlyI	GAGTC	2 cut(s)	121, 259
MnlI	CCTC	9 cut(s)	88, 124, 131, 172, 185, 226, 262, 310, 323
MseI	TTAA	1 cut(s)	379
MspA1I	CMGCKG	2 cut(s)	65, 342
MunI	CAATTG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	339, 348, 357
NlaIII	CATG	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	341, 353
PleI	GAGTC	2 cut(s)	120, 258
PpsI	GAGTC	2 cut(s)	120, 258
PspFI	CCCAGC	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	74, 212
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	128, 185
RsaNI	GTAC	2 cut(s)	127, 184
SacII	CCGCGG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	2 cut(s)	340, 352
Sau96I	GGNCC	2 cut(s)	74, 212
SchI	GAGTC	2 cut(s)	121, 259
SetI	ASST	1 cut(s)	67
SfaNI	GCATC	3 cut(s)	170, 308, 347
SfcI	CTRYAG	1 cut(s)	60
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	122, 142
SmoI	CTYRAG	2 cut(s)	122, 142
Sse9I	AATT	2 cut(s)	273, 292
SsiI	CCGC	3 cut(s)	340, 342, 352
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	88, 158, 188
TaqI	TCGA	2 cut(s)	26, 267
TasI	AATT	2 cut(s)	273, 292
TauI	GCSGC	2 cut(s)	342, 354
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TscAI	CASTG	2 cut(s)	161, 193
TspRI	CASTG	2 cut(s)	161, 193
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	273
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.