Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Reverse (-)

34163419 .. 34168083

Gene Structure 4665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40491.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTTCCAACTCTCTTCGTTGCATTCCTGCTTCTATTGGCTACTGATGTGGAGACAAATGCGATGGTTGCTGCCGATGACGCTAGGAAATGCGAGTCCCTGAGCCACAATTTCAACGGACTTTGCTTGAGCGAAAGCAACTGCGCGTCTGTTTGCGCAACTGAGGGCTTCACCGGAGGTGACTGCCGTGGTCTTCGCCGGAGATGCTTCTGCACTAAACAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

76

Amino Acids

8.13

Weight (kDa)

5.63

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	29 - 75	1.1e-17	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	157
AccII	CGCG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	71
AspLEI	GCGC	2 cut(s)	146, 158
AsuHPI	GGTGA	2 cut(s)	163, 191
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	92, 153
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	174, 199
BslFI	GGGAC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	93, 154
BspFNI	CGCG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	101, 162
BstDSI	CCRYGG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	146, 158
BstMAI	GTCTC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 80, 204
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	227
CfoI	GCGC	2 cut(s)	146, 158
CseI	GACGC	2 cut(s)	89, 135
CviJI	RGCY	3 cut(s)	41, 105, 168
CviKI_1	RGCY	3 cut(s)	41, 105, 168
DdeI	CTNAG	2 cut(s)	101, 162
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
FaqI	GGGAC	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	84
FspI	TGCGCA	1 cut(s)	157
GlaI	GCGC	2 cut(s)	145, 157
GluI	GCNGC	1 cut(s)	72
HapII	CCGG	2 cut(s)	174, 199
HgaI	GACGC	2 cut(s)	89, 135
HhaI	GCGC	2 cut(s)	146, 158
Hin6I	GCGC	2 cut(s)	144, 156
HinP1I	GCGC	2 cut(s)	144, 156
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	174, 199
HphI	GGTGA	2 cut(s)	163, 191
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	23, 213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 80, 204
HpyF3I	CTNAG	2 cut(s)	101, 162
HspAI	GCGC	2 cut(s)	144, 156
LpnPI	CCDG	4 cut(s)	41, 113, 187, 212
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	179
MboII	GAAGA	2 cut(s)	7, 185
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	2 cut(s)	157, 170
MseI	TTAA	1 cut(s)	226
MspI	CCGG	2 cut(s)	174, 199
Mva1269I	GAATGC	1 cut(s)	23
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	68, 80, 204
NmuCI	GTSAC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	157
PctI	GAATGC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	226
SatI	GCNGC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	104
SetI	ASST	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	194
SgeI	CNNG	9 cut(s)	40, 96, 106, 112, 139, 157, 186, 200, 211
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	222
TasI	AATT	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	227
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.