Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Reverse (-)

712407 .. 712565

Gene Structure 159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1012200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGTTGCAGAGGGTAGGACCTGCGAGTCTCAGAGTAACCCCTTCAAGGGGACTTGCGTGAGTAAAAGTAACTCTGTTGCTGTTTGCCAAATTGAGGGCTTCCCTGGAGGCCAGTGTTGTGGCCTATGCCGTAGATTCTTTTGCACTAGACATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

53

Amino Acids

5.62

Weight (kDa)

8.51

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	6 - 52	1e-11	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	29
AfiI	CCNNNNNNNGG	4 cut(s)	46, 47, 48, 94
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	109, 121
AspS9I	GGNCC	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 47, 48, 94
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	4 cut(s)	46, 47, 48, 94
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	111, 123
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	4 cut(s)	46, 47, 48, 94
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	111, 123
BspANI	GGCC	2 cut(s)	111, 123
BspCNI	CTCAG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	111, 123
BtsIMutI	CAGTG	1 cut(s)	119
BveI	ACCTGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	18
CviJI	RGCY	3 cut(s)	99, 111, 123
CviKI_1	RGCY	3 cut(s)	99, 111, 123
DdeI	CTNAG	1 cut(s)	30
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	103
FaiI	YATR	1 cut(s)	127
FaqI	GGGAC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	111, 123
HinfI	GANTC	2 cut(s)	26, 135
Hpy188I	TCNGA	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	8, 144
HpyF3I	CTNAG	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	34, 90, 117, 125
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	35, 68
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	4, 88, 101
MseI	TTAA	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	18
PspPPI	RGGWCCY	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	1 cut(s)	23
SgeI	CNNG	8 cut(s)	33, 37, 58, 66, 70, 116, 117, 124
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	103
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	157
Tru9I	TTAA	1 cut(s)	157
TscAI	CASTG	1 cut(s)	119
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	18
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.