Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Forward (+)

33209011 .. 33209357

Gene Structure 347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36104.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAGAGTTTCATGCGTATGTTTTCGGCTGTCTTCGTCGCTCTTCTGCTTCTGGTGGCTACTGGAATGGGGCCAAATACAATGGTCGCAGAAGCAAGAACTTGTGAGAGTCTGAGCCACAAGTTCAAGGGAACTTGCTTGAGTGAGACCAACTGTGCATCTGTTTGCAAAACTGAGGGCTTCAGTGGAGGCGACTGCCGCGGTCTTCGCCGCAGATGCTTCTGCACCAAACACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

80

Amino Acids

8.62

Weight (kDa)

8.73

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	33 - 79	1.1e-18	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	201
AciI	CCGC	3 cut(s)	199, 201, 211
AcuI	CTGAAG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	71
BbsI	GAAGAC	2 cut(s)	25, 197
BcoDI	GTCTC	1 cut(s)	140
BisI	GCNGC	2 cut(s)	199, 211
BlsI	GCNGC	2 cut(s)	200, 212
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	2 cut(s)	167, 206
BpiI	GAAGAC	2 cut(s)	25, 197
BpuEI	CTTGAG	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	104, 165
BseNI	ACTGG	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	140
BspACI	CCGC	3 cut(s)	199, 201, 211
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	105, 166
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	155, 236
Bst6I	CTCTTC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	113, 174
BstDSI	CCRYGG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 207, 216
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	25, 197
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	190, 232
Cfr13I	GGNCC	1 cut(s)	71
Cfr42I	CCGCGG	1 cut(s)	202
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	29, 59, 73, 117, 180
CviKI_1	RGCY	5 cut(s)	29, 59, 73, 117, 180
DdeI	CTNAG	2 cut(s)	113, 174
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	166
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 20
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	199, 211
Fsp4HI	GCNGC	2 cut(s)	199, 211
GluI	GCNGC	2 cut(s)	199, 211
HaeIII	GGCC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	155, 236
HpyCH4V	TGCA	3 cut(s)	158, 168, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 207, 216
HpyF3I	CTNAG	2 cut(s)	113, 174
Hsp92II	CATG	1 cut(s)	16
KspI	CCGCGG	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	48
LpnPI	CCDG	2 cut(s)	38, 48
LweI	GCATC	2 cut(s)	167, 206
MboII	GAAGA	3 cut(s)	25, 35, 197
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	169, 182
MseI	TTAA	1 cut(s)	238
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	198, 207, 216
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	200, 212
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	17
SacII	CCGCGG	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	2 cut(s)	199, 211
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	118
SfaNI	GCATC	2 cut(s)	167, 206
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SsiI	CCGC	3 cut(s)	199, 201, 211
TaaI	ACNGT	2 cut(s)	155, 236
TauI	GCSGC	2 cut(s)	201, 213
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TscAI	CASTG	2 cut(s)	190, 239
TspRI	CASTG	2 cut(s)	190, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.