AT2G02130

disruption of cells of other organism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001620
Physical Location & Seq
Forward (+)
539898 .. 540707
810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02130.1

Sequence Viewer

Length: 234 bp
ATGAAGCTCTCTGTGCGTTTTATCTCCGCTGCTCTTCTCTTGTTCATGGTATTCATTGCCACAGGGATGGGTCCAGTCACCGTGGAGGCACGCACGTGTGAGTCAAAAAGCCATAGGTTCAAGGGTCCATGTGTGAGCACACACAACTGTGCAAACGTGTGCCACAACGAAGGCTTCGGCGGAGGTAAATGCCGTGGATTCCGTCGTCGTTGCTACTGCACAAGACACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0050896 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gamma-thionin

Protein Analysis

77

Amino Acids

8.54

Weight (kDa)

9.63

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gamma-thionin PF00304 31 - 77 2.6e-20 Gamma-thionin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 27, 180
AcvI CACGTG 1 cut(s) 96
AflIII ACRYGT 2 cut(s) 95, 156
AgsI TTSAA 1 cut(s) 121
AleI CACNNNNGTG 2 cut(s) 94, 147
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 29
AspS9I GGNCC 2 cut(s) 71, 125
AsuHPI GGTGA 1 cut(s) 70
AvaII GGWCC 2 cut(s) 71, 125
BbrPI CACGTG 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 177
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 2 cut(s) 71, 125
BmgT120I GGNCC 2 cut(s) 71, 125
BmiI GGNNCC 2 cut(s) 72, 126
BsaAI YACGTR 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 81, 193
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 81, 193
BseGI GGATG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 140
BspACI CCGC 2 cut(s) 27, 180
BspLI GGNNCC 2 cut(s) 72, 126
BspQI GCTCTTC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 81, 193
Bst4CI ACNGT 2 cut(s) 82, 149
Bst6I CTCTTC 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 91
BstDSI CCRYGG 2 cut(s) 81, 193
BstF5I GGATG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 67
BtgI CCRYGG 2 cut(s) 81, 193
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 71, 125
CviAII CATG 2 cut(s) 46, 129
CviJI RGCY 3 cut(s) 7, 111, 174
CviKI_1 RGCY 3 cut(s) 7, 111, 174
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EciI GGCGGA 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 71, 125
Eco72I CACGTG 1 cut(s) 96
FaeI CATG 2 cut(s) 49, 132
FaiI YATR 3 cut(s) 47, 114, 130
FatI CATG 2 cut(s) 45, 128
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
Hin1II CATG 2 cut(s) 49, 132
HinfI GANTC 2 cut(s) 101, 198
HphI GGTGA 1 cut(s) 70
Hpy99I CGWCG 2 cut(s) 207, 210
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 82, 149
HpyCH4IV ACGT 2 cut(s) 95, 156
HpyCH4V TGCA 2 cut(s) 152, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpySE526I ACGT 2 cut(s) 95, 156
Hsp92II CATG 2 cut(s) 49, 132
LguI GCTCTTC 1 cut(s) 39
LpnPI CCDG 2 cut(s) 48, 87
Lsp1109I GCAGC 1 cut(s) 16
MaeII ACGT 2 cut(s) 95, 156
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 140
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 79, 176
MslI CAYNNNNRTG 3 cut(s) 65, 94, 147
MspA1I CMGCKG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 13
NlaIII CATG 2 cut(s) 49, 132
NlaIV GGNNCC 2 cut(s) 72, 126
NmuCI GTSAC 1 cut(s) 76
OliI CACNNNNGTG 2 cut(s) 94, 147
PciSI GCTCTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 109
PmaCI CACGTG 1 cut(s) 96
PmlI CACGTG 1 cut(s) 96
PpsI GAGTC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 96
PspCI CACGTG 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 72, 126
PspPI GGNCC 2 cut(s) 71, 125
RseI CAYNNNNRTG 3 cut(s) 65, 94, 147
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 71, 125
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 140
SetI ASST 5 cut(s) 9, 98, 119, 159, 187
SinI GGWCC 2 cut(s) 71, 125
SmiMI CAYNNNNRTG 3 cut(s) 65, 94, 147
SsiI CCGC 2 cut(s) 27, 180
TaaI ACNGT 2 cut(s) 82, 149
TaiI ACGT 2 cut(s) 98, 159
TfiI GAWTC 1 cut(s) 198
TscAI CASTG 1 cut(s) 233
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 17, 34, 43
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 71, 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.