Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Forward (+)

65199076 .. 65199433

Gene Structure 358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGAGTTTCATGCGTTTGTTTTGGACTTTCTTCGTCGCTCTCTGGCTTCTGGTGGCTACAGCTGGTATTATTATCTTCTATATCCTTCTGAGATTTGCGTGTTACACTTTTGATCTTACTTTCGGGATAGGACCAAATGTAACGGTTGCTGAGGCTAGAACTTGTGAGAGTCAGAGCCTCAAGTACGAGGGAATGTGCTTGAGAGAGAGCCACTGTGCATCTGTTTGCCAAACTGAGGGGTACAGTGGAGGCGACTGCCACGGTTTCTATAGCATATGTGTCTGTACCAAAGATTGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

101

Amino Acids

11.39

Weight (kDa)

5.14

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	54 - 100	5.4e-15	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	188, 245, 289
AfiI	CCNNNNNNNGG	1 cut(s)	238
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	60, 271
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	167, 223
BsaJI	CCNNGG	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	83, 144, 228
BslI	CCNNNNNNNGG	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	115
BspCNI	CTCAG	3 cut(s)	84, 145, 229
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	4 cut(s)	148, 218, 248, 266
BstDEI	CTNAG	3 cut(s)	92, 153, 237
BstDSI	CCRYGG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstSFI	CTRYAG	2 cut(s)	60, 271
BtgI	CCRYGG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	214, 253
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	3 cut(s)	187, 244, 288
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	49, 59, 65, 158, 180, 213
CviKI_1	RGCY	6 cut(s)	49, 59, 65, 158, 180, 213
CviQI	GTAC	3 cut(s)	187, 244, 288
DdeI	CTNAG	3 cut(s)	92, 153, 237
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	134
FaeI	CATG	1 cut(s)	16
FaiI	YATR	5 cut(s)	14, 84, 273, 278, 280
FatI	CATG	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	278
FspBI	CTAG	1 cut(s)	159
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	93, 177
Hpy188III	TCNNGA	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	4 cut(s)	148, 218, 248, 266
HpyCH4V	TGCA	1 cut(s)	221
HpyF3I	CTNAG	3 cut(s)	92, 153, 237
Hsp92II	CATG	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	3 cut(s)	31, 38, 51
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	104, 142
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	25, 70
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	148, 184, 191, 232, 245
MspA1I	CMGCKG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	278
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	16
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	188, 245, 289
RsaNI	GTAC	3 cut(s)	187, 244, 288
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	181
SetI	ASST	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	2 cut(s)	60, 271
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	182, 202
SmoI	CTYRAG	2 cut(s)	182, 202
SspMI	CTAG	1 cut(s)	159
TaaI	ACNGT	4 cut(s)	148, 218, 248, 266
TscAI	CASTG	2 cut(s)	221, 253
TspRI	CASTG	2 cut(s)	221, 253
VpaK11BI	GGWCC	1 cut(s)	134
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.