Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Reverse (-)

35575194 .. 35575959

Gene Structure 766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1301000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAGCGTTCCATGCGTTTATTTCCAACCGCCTTCGTCTTCCTGCTGCTTTTGGTAGCCACCGGGACGATGGTTGCTGAGGGTAGGACCTGCGAGTCTCAGAGTAACCGCTTCAAAGGAACATGCGTGAGTAAAAGTAACTGTGCTGCTGTTTGCCAAACTGAGGGCTTCCCCGGAGGCAATTGTCGTGGCTTACGCCGTAGATGCTTTTGCACTAAACATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

76

Amino Acids

8.27

Weight (kDa)

9.33

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	29 - 75	3.5e-19	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	98
AciI	CCGC	2 cut(s)	30, 109
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	46, 146
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	2 cut(s)	64, 174
AvaII	GGWCC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	33, 133
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	64, 174
BcoDI	GTCTC	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	47, 147
BlsI	GCNGC	2 cut(s)	48, 148
Bme1390I	CCNGG	2 cut(s)	64, 174
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmrFI	CCNGG	2 cut(s)	64, 174
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	64, 174
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	69, 113, 153
BseXI	GCAGC	2 cut(s)	33, 133
BsiSI	CCGG	2 cut(s)	63, 174
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	30, 109
BspCNI	CTCAG	3 cut(s)	70, 112, 154
BspMI	ACCTGC	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	78, 99, 162
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 204
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	62, 172
BstV1I	GCAGC	2 cut(s)	33, 133
BstV2I	GAAGAC	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	87
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	2 cut(s)	13, 123
CviJI	RGCY	3 cut(s)	59, 168, 192
CviKI_1	RGCY	3 cut(s)	59, 168, 192
DdeI	CTNAG	3 cut(s)	78, 99, 162
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	87
FaeI	CATG	2 cut(s)	16, 126
FaiI	YATR	2 cut(s)	14, 124
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	12, 122
Fnu4HI	GCNGC	2 cut(s)	47, 147
Fsp4HI	GCNGC	2 cut(s)	47, 147
GluI	GCNGC	2 cut(s)	47, 147
HapII	CCGG	2 cut(s)	63, 174
Hin1II	CATG	2 cut(s)	16, 126
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	63, 174
Hpy188I	TCNGA	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 204
HpyF3I	CTNAG	3 cut(s)	78, 99, 162
Hsp92II	CATG	2 cut(s)	16, 126
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	56, 76, 103, 187
Lsp1109I	GCAGC	2 cut(s)	33, 133
LweI	GCATC	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	104, 137
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	181
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	73, 157, 170
MseI	TTAA	1 cut(s)	226
MspI	CCGG	2 cut(s)	63, 174
MspR9I	CCNGG	2 cut(s)	64, 174
MunI	CAATTG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	13, 204
NciI	CCSGG	2 cut(s)	64, 174
NlaIII	CATG	2 cut(s)	16, 126
NspI	RCATGY	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	48, 148
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	87
PspPPI	RGGWCCY	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	226
SatI	GCNGC	2 cut(s)	47, 147
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	64, 174
SetI	ASST	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	87
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	30, 109
StyD4I	CCNGG	2 cut(s)	62, 172
TaaI	ACNGT	1 cut(s)	143
TasI	AATT	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TseI	GCWGC	2 cut(s)	46, 146
VpaK11BI	GGWCC	1 cut(s)	87
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.