Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Forward (+)

72295660 .. 72296409

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG426700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAAGGTTTCATGCGTATGTTTTCGACTTTCTTCGTCGGTCTCCTGCTTCTTGTGGCTACAGCTGGGATAGGGCCAAATGTAATGGTTGCTGAGGCCAGAAAATGTGAGAGTCAAAGCCACAAGTTTGAGGGAATTTGCTTGAAACAGAGCAATTGTGCATCTATTTGCAAAACTGAGGGTTACAGTGGAGGCAACTGTCGTGGTTTTCGCCGCAGATGCTTCTGCACCAAAGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

80

Amino Acids

8.83

Weight (kDa)

8.9

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	34 - 80	5.6e-17	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	74, 96
ApoI	RAATTY	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	74
BmsI	GCATC	2 cut(s)	170, 209
Bpu10I	CCTNAGC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	84, 168
BseYI	CCCAGC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	76, 98
BsmAI	GTCTC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	76, 98
Bso31I	GGTCTC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	76, 98
BspCNI	CTCAG	2 cut(s)	85, 169
BspTNI	GGTCTC	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	188, 200
BstDEI	CTNAG	2 cut(s)	93, 177
BstMAI	GTCTC	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	76, 98
BtsIMutI	CAGTG	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	74
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	59, 65, 76, 98, 120
CviKI_1	RGCY	5 cut(s)	59, 65, 76, 98, 120
DdeI	CTNAG	2 cut(s)	93, 177
Eco31I	GGTCTC	1 cut(s)	47
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 20
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
GsaI	CCCAGC	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	76, 98
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	188, 200
HpyCH4V	TGCA	3 cut(s)	161, 171, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	2 cut(s)	93, 177
Hsp92II	CATG	1 cut(s)	16
LpnPI	CCDG	3 cut(s)	51, 59, 112
LweI	GCATC	2 cut(s)	170, 209
MaeIII	GTNAC	1 cut(s)	182
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	154
MluCI	AATT	2 cut(s)	135, 154
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	88, 124, 172, 185
MseI	TTAA	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	241
SatI	GCNGC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	121
SetI	ASST	2 cut(s)	10, 67
SfaNI	GCATC	2 cut(s)	170, 209
SfcI	CTRYAG	1 cut(s)	60
SgeI	CNNG	8 cut(s)	25, 58, 65, 78, 111, 136, 154, 215
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	135, 154
SsiI	CCGC	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	188, 200
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	135, 154
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	241
Tru9I	TTAA	1 cut(s)	241
TscAI	CASTG	1 cut(s)	193
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.