Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Reverse (-)

508880 .. 509289

Gene Structure 410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCACAGCACCGATCTGGCAGCTCCACAACAAGTCTATATAACTGGGCTTGCAAGGTCACTAATCTTCACATCGATCTAACTCATACAGTATATTTCATATATAGAAAGATGGAGCGTTTTTCGACTGCCTTTGTCTTTGTTCTTCTTTTGGGGGCTACAGGGATAATGGGACCAATGCTTGTGGAGGGTAGGACCTGTGAGGCTCACAGCCGCAAGTTCAAGGGACACTGCCATAGTAAAAGCAACTGTGCATCTGTTTGCCAGACTGAGGGCTTTCAGGGAGGCCATTGTCATGGCATTCGCCGTAGATGCTTCTGCACTAAACATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

112

Amino Acids

12.52

Weight (kDa)

9.37

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	173, 195
AvaII	GGWCC	2 cut(s)	173, 195
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	22, 214
BlsI	GCNGC	2 cut(s)	23, 215
Bme18I	GGWCC	2 cut(s)	173, 195
BmgT120I	GGNCC	2 cut(s)	173, 195
BmiI	GGNNCC	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	263, 302
BmuI	ACTGGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	50
BseCI	ATCGAT	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	288
BshVI	ATCGAT	1 cut(s)	75
BslFI	GGGAC	2 cut(s)	186, 240
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	186, 240
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	288
Bsp143I	GATC	2 cut(s)	14, 76
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	14, 76
Bst4CI	ACNGT	2 cut(s)	91, 251
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	17, 79
BstMBI	GATC	2 cut(s)	14, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	173, 195
ClaI	ATCGAT	1 cut(s)	75
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	7 cut(s)	24, 50, 158, 206, 213, 276, 288
CviKI_1	RGCY	7 cut(s)	24, 50, 158, 206, 213, 276, 288
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	16, 78
DpnII	GATC	2 cut(s)	14, 76
Eco47I	GGWCC	2 cut(s)	173, 195
EcoO109I	RGGNCCY	1 cut(s)	195
FaeI	CATG	1 cut(s)	299
FaiI	YATR	9 cut(s)	40, 42, 87, 94, 101, 103, 105, 237, 297
FaqI	GGGAC	2 cut(s)	186, 240
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	22, 214
Fsp4HI	GCNGC	2 cut(s)	22, 214
GluI	GCNGC	2 cut(s)	22, 214
HaeIII	GGCC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	299
HpyCH4III	ACNGT	2 cut(s)	91, 251
HpyCH4V	TGCA	3 cut(s)	54, 254, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	14, 76
LmnI	GCTCC	2 cut(s)	29, 115
LpnPI	CCDG	6 cut(s)	3, 31, 147, 211, 266, 278
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	2 cut(s)	263, 302
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	16, 78
MboI	GATC	2 cut(s)	14, 76
MboII	GAAGA	2 cut(s)	59, 137
MnlI	CCTC	4 cut(s)	181, 196, 265, 278
MseI	TTAA	1 cut(s)	334
MslI	CAYNNNNRTG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	2 cut(s)	14, 76
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	58
PctI	GAATGC	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	23, 215
PpuMI	RGGWCCY	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	173, 195
PspPPI	RGGWCCY	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	334
SatI	GCNGC	2 cut(s)	22, 214
Sau3AI	GATC	2 cut(s)	14, 76
Sau96I	GGNCC	2 cut(s)	173, 195
SetI	ASST	3 cut(s)	26, 60, 200
SfaNI	GCATC	2 cut(s)	263, 302
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	173, 195
SmiMI	CAYNNNNRTG	1 cut(s)	294
SsiI	CCGC	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	91, 251
TaqI	TCGA	2 cut(s)	75, 125
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	173, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.