Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Forward (+)

68645521 .. 68646487

Gene Structure 967 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG453400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAGAGTTTCATGCGTGTGTTTTCGGCTTTCTTCGTCGCTCTCTTGCTTCTGGTGGCTACAGCTGGGATAGGACCAAATGTAATGGTTGCTGAGGCTAGAACTTGTGAGAGTCAGAGCCTCAAGTACGAGGGAATGTGCTTGAGAGAGAGCCACTGTGCATCTGTTTGCCAAACTGAGGGGTACAGTGGAGGCGACTGCCACGGTCTCTATAGCATATGTGTCTGTACCAAAGATTGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

81

Amino Acids

8.76

Weight (kDa)

5.11

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	34 - 80	4.1e-15	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	128, 185, 229
AfiI	CCNNNNNNNGG	1 cut(s)	178
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	74
BbvCI	CCTCAGC	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	60, 211
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	2 cut(s)	107, 163
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	84, 168
BseYI	CCCAGC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	212
Bso31I	GGTCTC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	85, 169
BspTNI	GGTCTC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	158, 188, 206
BstDEI	CTNAG	2 cut(s)	93, 177
BstDSI	CCRYGG	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	60, 211
BtgI	CCRYGG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	154, 193
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	127, 184, 228
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	29, 59, 65, 98, 120, 153
CviKI_1	RGCY	6 cut(s)	29, 59, 65, 98, 120, 153
CviQI	GTAC	3 cut(s)	127, 184, 228
DdeI	CTNAG	2 cut(s)	93, 177
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	74
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 213, 218, 220
FatI	CATG	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	69
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	158, 188, 206
HpyCH4V	TGCA	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	93, 177
Hsp92II	CATG	1 cut(s)	16
LpnPI	CCDG	2 cut(s)	38, 51
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	99
MboII	GAAGA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	5 cut(s)	88, 124, 131, 172, 185
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	218
NlaIII	CATG	1 cut(s)	16
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	128, 185, 229
RsaNI	GTAC	3 cut(s)	127, 184, 228
RseI	CAYNNNNRTG	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	121
SetI	ASST	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	2 cut(s)	60, 211
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	122, 142
SmoI	CTYRAG	2 cut(s)	122, 142
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	3 cut(s)	158, 188, 206
TscAI	CASTG	2 cut(s)	161, 193
TspRI	CASTG	2 cut(s)	161, 193
VpaK11BI	GGWCC	1 cut(s)	74
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.