Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000961.1

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Reverse (-)

63922 .. 64280

Gene Structure 359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000961.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atggagggtttcatgcgtatgttttcaactttcttcgtcgctatcctgctcctggtggctactgggatggggccgaatgcaatggtcgctgaggccagaacttgtgagactctgagccacaagttcaagggaacttgcttgagagagagcaactgcgcatctgtttgccaaactgagggcttcagtggaggtgactgccgtggccttcgccgcagatgcttctgcaccaaacattgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

79

Amino Acids

8.71

Weight (kDa)

8.75

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	157
AciI	CCGC	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	52, 175
AgsI	TTSAA	2 cut(s)	27, 127
AjnI	CCWGG	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	101
AoxI	GGCC	3 cut(s)	71, 93, 202
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	203
BbvCI	CCTCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	167, 206
BmuI	ACTGGG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 175
Bse1I	ACTGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	52, 175
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	81, 104, 165
BseNI	ACTGG	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	73, 95, 204
BslI	CCNNNNNNNGG	2 cut(s)	52, 175
BsmAI	GTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	73, 95, 204
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	3 cut(s)	73, 95, 204
BspCNI	CTCAG	3 cut(s)	82, 105, 166
BspLI	GGNNCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	90, 113, 174
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 210, 216
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	73, 95, 204
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	59, 73, 95, 117, 180, 204
CviKI_1	RGCY	6 cut(s)	59, 73, 95, 117, 180, 204
DdeI	CTNAG	3 cut(s)	90, 113, 174
Eco57I	CTGAAG	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 20
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	211
FspI	TGCGCA	1 cut(s)	157
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	3 cut(s)	73, 95, 204
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	80, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 210, 216
HpyF3I	CTNAG	3 cut(s)	90, 113, 174
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	38, 48, 59, 65, 109
LweI	GCATC	2 cut(s)	167, 206
MaeIII	GTNAC	1 cut(s)	191
MboII	GAAGA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	85, 169, 182
MseI	TTAA	1 cut(s)	238
MslI	CAYNNNNRTG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	86, 210, 216
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	191
NsbI	TGCGCA	1 cut(s)	157
PctI	GAATGC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	238
SatI	GCNGC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	1 cut(s)	193
SfaNI	GCATC	2 cut(s)	167, 206
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SsiI	CCGC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	51
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	238
Tru9I	TTAA	1 cut(s)	238
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspRI	CASTG	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.