Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001620

Physical Location & Seq

Genomic Coordinates Forward (+)

544647 .. 545564

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAAGCTCTCTCTGCGTTTGATCTCAGCCCTTCTCATGTCGGTCATGCTCCTCTTCGCCACAGGAATGGGTCCTGTGGAAGCAAGAACTTGTGAGTCACCAAGTAACAAGTTCCAAGGAGTTTGTCTCAACTCACAGAGCTGTGCCAAAGCTTGCCCTAGCGAAGGTTTTTCAGGCGGTCGATGTAGTAGTCTCCGTTGCTACTGCTCCAAAGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0016020 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gamma-thionin

Protein Analysis

73

Amino Acids

7.72

Weight (kDa)

8.92

Isoelectric Point (pI)

76.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	29 - 73	6.7e-15	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61070 AT2G02100 AT2G02120 AT2G02130 AT2G02140
fragaria_vesca	FvH4_2g25190 FvH4_3g40491 FvH4_4g36102 FvH4_4g36104
malus_domestica	MD02G1301000.v1.1 MD02G1301100.v1.1 MD13G1012200.v1.1 MD13G1012400.v1.1 MD16G1009000.v1.1 MD16G1009100.v1.1
prunus_persica	Prupe.1G341500_v2.0.a1
pyrus_communis	pycom02g25280 pycom16g00860 pycom16g00870 pycom16g00880
rosa_chinensis	RchiOBHm_Chr4g0445761 RchiOBHm_Chr4g0445781 RchiOBHm_Chr4g0445791 RchiOBHm_Chr4g0445801 RchiOBHm_Chr4g0445851
rosa_laevigata	RLG00000005710
rosa_multiflora	Rmu_co8418995.1_g000001 Rmu_sc0000961.1_g000016 Rmu_sc0003637.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386230 Rroxscaffold_5G00386260 Rroxscaffold_5G00386270
rosa_rugosa	Rorug04G0365300 Rorug04G0365300 Rorug04G0365300
rosa_samantha	Rh4AG426300 Rh4AG426600 Rh4AG426700 Rh4BG437100 Rh4CG453400 Rh4CG453500 Rh4CG453900 Rh4DG434600 Rh4DG434900 Rh4DG435000 Rh4DG435300
rosa_wichuraiana	Rw4G036510 Rw4G036520 Rw4G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	7, 141, 152
AluI	AGCT	3 cut(s)	7, 141, 152
Alw26I	GTCTC	2 cut(s)	131, 197
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	131, 197
BfaI	CTAG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	131, 197
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	154, 217
BstDEI	CTNAG	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	2 cut(s)	131, 197
BstMBI	GATC	1 cut(s)	21
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	154, 217
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	2 cut(s)	37, 46
CviJI	RGCY	5 cut(s)	7, 29, 141, 152, 215
CviKI_1	RGCY	5 cut(s)	7, 29, 141, 152, 215
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	40, 49
FaiI	YATR	2 cut(s)	38, 47
FatI	CATG	2 cut(s)	36, 45
FspBI	CTAG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	40, 49
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	1 cut(s)	95
HphI	GGTGA	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	41, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	40, 49
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	54, 212
LpnPI	CCDG	3 cut(s)	48, 87, 159
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	96, 104
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	2 cut(s)	40, 49
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	104
SetI	ASST	4 cut(s)	9, 143, 154, 169
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	65
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	115
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	162
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.