AT2G03810

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000995
Physical Location & Seq
Forward (+)
1160947 .. 1164657
3711 bp
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UTR
Exon/CDS
Intron
AT2G03810.2

Sequence Viewer

Length: 1320 bp
ATGAGAGCAGATAATGATCACGCGCTTGGTAACTCGATAGAGATTTGTAAAGATGAATCTAAGCCGCATCAATGTCTTGATGAGAATTGGGAAGATGCAGAGCTAAAGGTCCCGGAAAATGGGAAGAACAACAACAATGTGTGTGAGTTGTTCTATGATACAAGAAGTGGTGAAGAATGGGAGAATGAGGCCGGAAAGAAAGTTCGAGATACTAGTCATGATTGTGATGCTAATGTGGATTCTCCTGAGAAAAAGGATCCGGTTTTCTATATGGACAAGAATGTTACGGCCTGTGATTTACCTGAGATTGTTGTTTGTTACAAGGAGAATACTTACCATATCGTCAAAGATATATGTGTCGATGAAGGTGTGCCTGTTCAGGAGAAGTTCTTATTTGGTGAGAAGGATTCTGTCAAGTCTAGCTCAACAGAGGATTTGATGAAAGCAGACAAAACAAATGTGAATCCATCAGAAACTAAGTCTGCGGAAGACAGCATCAGTAAGGTTGATGATTCTGAGTTTTGTAACGATCATAAGACAGACAGAGATGTTGAAGAATCTTCAGGAGAAGATTTTGCTGATGCTGAAGGTACTTCTAGCAATTACAATCAAGAGCATTTGATTGTGACAGAGGAAGTCAAGGCTTCACCAACACATGGGCTAAGTCCCTCTGAAATTGAACCTGATGAGAATTCAAAGGACGAAGTGGCTATATCACAGGATAATGACTCAAAGGAATGTTTAACATTGGGAGATATTCTATCAAGGGAAGATGAACAAAAATCTCTCAACCAAGACAACATTAGCAGCGATAGTCATGAAGAACAATCTCCTTCTCAGCTTCAGGATAAGGAAAAAAGAAGCTTAGAAACCACAGCTATCGAAACAGAGCTTGAGAAAACAGAGGAGCCAAAACAAGGAGAGGAGAAGCTTTCCTCTGTTTCTACAACGACCTCTCAAGAACCAAACAAAACTTGCAACGAACCTGAAAAGCCTGAAACTGAGAATCATCATCAGCAAAACTGTTTAGTGGAAAACTCTTACGAAGACGATAAATTTTCTTCAAGCAGATTTGGAGAGACGAGTTTCTCTGCAGCAGATTCAGTTTCAATATCAGGTCATATAACATACTCAGGACCAATTGCATACTCTGGAAGCCTCTCTGTTCGATCAGATGCAAGCACAACGAGTGGAAGATCCTTTGCTTTCCCAATATTGCAATCAGAATGGAACAGTAGTCCTGTAAGAATGGCGAAAGCTGATAAAAGAAGACAAAAAGGAGGATGGAGACACACTCTTCTCTGCTGTAGATTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

49.07

Weight (kDa)

4.52

Isoelectric Point (pI)

65.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 656
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 65, 485
AclWI GGATC 3 cut(s) 251, 264, 1191
AcsI RAATTY 2 cut(s) 691, 1055
AcuI CTGAAG 3 cut(s) 546, 606, 827
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 3 cut(s) 119, 656, 917
AgsI TTSAA 5 cut(s) 554, 680, 696, 1065, 1110
AhlI ACTAGT 1 cut(s) 212
AloI GAACNNNNNNTCC 2 cut(s) 186, 218
AluBI AGCT 8 cut(s) 103, 423, 841, 864, 878, 892, 931, 1259
AluI AGCT 8 cut(s) 103, 423, 841, 864, 878, 892, 931, 1259
Alw26I GTCTC 2 cut(s) 1073, 1282
AlwI GGATC 3 cut(s) 251, 264, 1191
AoxI GGCC 2 cut(s) 189, 288
ApeKI GCWGC 2 cut(s) 807, 1094
ApoI RAATTY 2 cut(s) 691, 1055
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 109, 1136
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 182, 410, 639
AvaII GGWCC 2 cut(s) 109, 1136
BamHI GGATCC 1 cut(s) 256
BbsI GAAGAC 3 cut(s) 495, 1053, 1276
BbvI GCAGC 2 cut(s) 819, 1106
BccI CCATC 2 cut(s) 475, 1278
BceAI ACGGC 1 cut(s) 303
BclI TGATCA 1 cut(s) 16
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 1073, 1282
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 3 cut(s) 213, 420, 597
BfmI CTRYAG 2 cut(s) 1092, 1306
BisI GCNGC 3 cut(s) 65, 808, 1095
BlsI GCNGC 3 cut(s) 66, 809, 1096
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 109, 1136
BmgT120I GGNCC 2 cut(s) 109, 1136
BmiI GGNNCC 3 cut(s) 111, 258, 909
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 6 cut(s) 76, 85, 217, 504, 571, 1165
BpiI GAAGAC 3 cut(s) 495, 1053, 1276
BplI GAGNNNNNCTC 2 cut(s) 1279, 1311
BpuEI CTTGAG 2 cut(s) 914, 942
BpuMI CCSGG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 656, 917
Bse8I GATNNNNATC 1 cut(s) 15
BseGI GGATG 1 cut(s) 1289
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 119, 656, 917
BseMII CTCAG 6 cut(s) 237, 294, 507, 851, 993, 1146
BseRI GAGGAG 2 cut(s) 920, 938
BseXI GCAGC 2 cut(s) 819, 1106
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 191, 290
BsiSI CCGG 3 cut(s) 113, 192, 260
BslFI GGGAC 2 cut(s) 95, 651
BslI CCNNNNNNNGG 3 cut(s) 119, 656, 917
BsmAI GTCTC 2 cut(s) 1073, 1282
BsmBI CGTCTC 1 cut(s) 1073
BsmFI GGGAC 2 cut(s) 95, 651
BsnI GGCC 2 cut(s) 191, 290
Bsp143I GATC 5 cut(s) 16, 256, 529, 1169, 1196
BspACI CCGC 2 cut(s) 65, 485
BspANI GGCC 2 cut(s) 191, 290
BspCNI CTCAG 6 cut(s) 238, 295, 508, 850, 994, 1145
BspFNI CGCG 1 cut(s) 23
BspHI TCATGA 2 cut(s) 217, 817
BspLI GGNNCC 3 cut(s) 111, 258, 909
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 3 cut(s) 251, 264, 1191
BssMI GATC 5 cut(s) 16, 256, 529, 1169, 1196
Bst4CI ACNGT 2 cut(s) 1025, 1235
Bst6I CTCTTC 1 cut(s) 1302
BstC8I GCNNGC 1 cut(s) 1180
BstF5I GGATG 1 cut(s) 1289
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 5 cut(s) 19, 259, 532, 1172, 1199
BstMAI GTCTC 2 cut(s) 1073, 1282
BstMBI GATC 5 cut(s) 16, 256, 529, 1169, 1196
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 1092, 1306
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 819, 1106
BstV2I GAAGAC 3 cut(s) 495, 1053, 1276
BstX2I RGATCY 2 cut(s) 256, 1196
BstYI RGATCY 2 cut(s) 256, 1196
BsuRI GGCC 2 cut(s) 191, 290
BtsCI GGATG 1 cut(s) 1289
Cac8I GCNNGC 1 cut(s) 1180
CciI TCATGA 2 cut(s) 217, 817
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 109, 1136
Csp6I GTAC 1 cut(s) 591
CviAII CATG 3 cut(s) 218, 656, 818
CviQI GTAC 1 cut(s) 591
DpnI GATC 5 cut(s) 18, 258, 531, 1171, 1198
DpnII GATC 5 cut(s) 16, 256, 529, 1169, 1196
Eam1104I CTCTTC 1 cut(s) 1302
EarI CTCTTC 1 cut(s) 1302
Eco47I GGWCC 2 cut(s) 109, 1136
Eco57I CTGAAG 3 cut(s) 546, 606, 827
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 691
Esp3I CGTCTC 1 cut(s) 1073
FaeI CATG 3 cut(s) 221, 659, 821
FaqI GGGAC 2 cut(s) 95, 651
FatI CATG 3 cut(s) 217, 655, 817
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 65, 808, 1095
FokI GGATG 1 cut(s) 1296
Fsp4HI GCNGC 3 cut(s) 65, 808, 1095
FspBI CTAG 3 cut(s) 213, 420, 597
GlaI GCGC 1 cut(s) 24
GluI GCNGC 3 cut(s) 65, 808, 1095
HaeIII GGCC 2 cut(s) 191, 290
HapII CCGG 3 cut(s) 113, 192, 260
HhaI GCGC 1 cut(s) 25
Hin1II CATG 3 cut(s) 221, 659, 821
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 2 cut(s) 862, 929
HpaII CCGG 3 cut(s) 113, 192, 260
HphI GGTGA 3 cut(s) 182, 410, 639
Hpy188I TCNGA 5 cut(s) 472, 517, 673, 1174, 1225
HpyAV CCTTC 4 cut(s) 359, 397, 581, 843
HpyCH4III ACNGT 2 cut(s) 1025, 1235
HpyCH4V TGCA 6 cut(s) 98, 978, 1094, 1145, 1178, 1219
Hsp92II CATG 3 cut(s) 221, 659, 821
HspAI GCGC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 256, 529, 1169, 1196
LmnI GCTCC 1 cut(s) 907
Lsp1109I GCAGC 2 cut(s) 819, 1106
LweI GCATC 6 cut(s) 76, 85, 217, 504, 571, 1165
MaeI CTAG 3 cut(s) 213, 420, 597
MaeIII GTNAC 5 cut(s) 29, 283, 317, 524, 625
MalI GATC 5 cut(s) 18, 258, 531, 1171, 1198
MboI GATC 5 cut(s) 16, 256, 529, 1169, 1196
MfeI CAATTG 1 cut(s) 1140
MflI RGATCY 2 cut(s) 256, 1196
MluCI AATT 6 cut(s) 85, 601, 675, 691, 1055, 1140
MlyI GAGTC 1 cut(s) 722
MseI TTAA 1 cut(s) 743
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 3 cut(s) 113, 192, 260
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 1140
MvnI CGCG 1 cut(s) 23
NciI CCSGG 1 cut(s) 113
NdeII GATC 5 cut(s) 16, 256, 529, 1169, 1196
NlaIII CATG 3 cut(s) 221, 659, 821
NlaIV GGNNCC 3 cut(s) 111, 258, 909
NmuCI GTSAC 1 cut(s) 625
PagI TCATGA 2 cut(s) 217, 817
PfeI GAWTC 9 cut(s) 56, 239, 407, 463, 512, 557, 1006, 1100, 1311
PflMI CCANNNNNTGG 1 cut(s) 656
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 3 cut(s) 66, 809, 1096
PleI GAGTC 1 cut(s) 722
PpsI GAGTC 1 cut(s) 722
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 111, 258, 909
PspPI GGNCC 2 cut(s) 109, 1136
PspPPI RGGWCCY 1 cut(s) 109
PstI CTGCAG 1 cut(s) 1096
PsuI RGATCY 2 cut(s) 256, 1196
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 743
SatI GCNGC 3 cut(s) 65, 808, 1095
Sau3AI GATC 5 cut(s) 16, 256, 529, 1169, 1196
Sau96I GGNCC 2 cut(s) 109, 1136
SchI GAGTC 1 cut(s) 722
ScrFI CCNGG 1 cut(s) 113
SfaNI GCATC 6 cut(s) 76, 85, 217, 504, 571, 1165
SfcI CTRYAG 2 cut(s) 1092, 1306
SinI GGWCC 2 cut(s) 109, 1136
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 893, 957
SmoI CTYRAG 2 cut(s) 893, 957
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 6 cut(s) 85, 601, 675, 691, 1055, 1140
SsiI CCGC 2 cut(s) 65, 485
SspI AATATT 1 cut(s) 1215
SspMI CTAG 3 cut(s) 213, 420, 597
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 1025, 1235
TaqI TCGA 5 cut(s) 35, 205, 360, 882, 1168
TasI AATT 6 cut(s) 85, 601, 675, 691, 1055, 1140
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 9 cut(s) 56, 239, 407, 463, 512, 557, 1006, 1100, 1311
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 2 cut(s) 807, 1094
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 5 cut(s) 69, 378, 455, 789, 834
Van91I CCANNNNNTGG 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 109, 1136
XapI RAATTY 2 cut(s) 691, 1055
XspI CTAG 3 cut(s) 213, 420, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.