Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Reverse (-)

47466350 .. 47467689

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGACAAAGACCTCCCCAGTATCAAGAAATGGGTTGTGCTGTATCCAGTTTACATCAATTCTAAGAAAACTGTGGCTGAAGGGAGGAGAATAGCTCTTGAGAAAGCATGTGAGAATCCGACTTGTGCTGAGATTGGGGATTGCTGCAGCCATTTCAAAGTTCCATTTGCTATTGAGATAGATAAGGCTTATCCACGTGATTTCTTTCAAAGAGGGCGAGTGAGGGTATTGCTCAAAAAGGAAGATGGAACTCCATTTAATCCAGCCATTGCTACTAGGAAACAGCTGATGCTTCGAGTTGCTGAGTTGGTTCCTAGACATCCTGGTAGGACCAAGAAGCAGGAGCCAGCATCAACGTCTACTGCTGGGCCTTCCAAATCTGGGAAGCATGGGAAGAAAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.2

Weight (kDa)

9.98

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP19	PF01922	13 - 107	5.5e-33	SRP19 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	99
AcvI	CACGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	157, 209
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	95, 286
AluI	AGCT	2 cut(s)	95, 286
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	144, 147
AspS9I	GGNCC	2 cut(s)	330, 368
AvaII	GGWCC	1 cut(s)	330
BbrPI	CACGTG	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	131, 159
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	54
BfaI	CTAG	2 cut(s)	276, 315
BfmI	CTRYAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	145, 148
BlsI	GCNGC	2 cut(s)	146, 149
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	330, 368
BmiI	GGNNCC	2 cut(s)	312, 345
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	279, 359
BmuI	ACTGGG	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	79, 111
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	18, 47
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	120, 294
BseNI	ACTGG	2 cut(s)	18, 47
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	131, 159
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	381
BsnI	GGCC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	2 cut(s)	121, 295
BspLI	GGNNCC	2 cut(s)	312, 345
BspMAI	CTGCAG	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	18, 47
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	63, 129, 303
BstF5I	GGATG	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	145
BstV1I	GCAGC	2 cut(s)	131, 159
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	330, 368
CviAII	CATG	2 cut(s)	108, 389
CviJI	RGCY	8 cut(s)	77, 95, 150, 188, 266, 286, 346, 370
CviKI_1	RGCY	8 cut(s)	77, 95, 150, 188, 266, 286, 346, 370
DdeI	CTNAG	3 cut(s)	63, 129, 303
Eco47I	GGWCC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	99
Eco72I	CACGTG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	111, 392
FaiI	YATR	2 cut(s)	109, 390
FatI	CATG	2 cut(s)	107, 388
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	145, 148
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	145, 148
FspBI	CTAG	2 cut(s)	276, 315
GluI	GCNGC	2 cut(s)	145, 148
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	111, 392
HinfI	GANTC	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	52, 360
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	2 cut(s)	25, 98
Hpy8I	GTNNAC	2 cut(s)	52, 360
HpyAV	CCTTC	2 cut(s)	74, 381
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	196, 356
HpyCH4V	TGCA	1 cut(s)	147
HpyF3I	CTNAG	3 cut(s)	63, 129, 303
HpySE526I	ACGT	2 cut(s)	196, 356
Hsp92II	CATG	2 cut(s)	111, 392
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	9 cut(s)	31, 60, 276, 309, 326, 336, 351, 360, 366
Lsp1109I	GCAGC	2 cut(s)	131, 159
LweI	GCATC	2 cut(s)	279, 359
MaeI	CTAG	2 cut(s)	276, 315
MaeII	ACGT	2 cut(s)	196, 356
MboII	GAAGA	2 cut(s)	254, 406
MluCI	AATT	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	23, 78, 206, 216
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
NlaIII	CATG	2 cut(s)	111, 392
NlaIV	GGNNCC	2 cut(s)	312, 345
NspI	RCATGY	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	146, 149
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	322
PspCI	CACGTG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	312, 345
PspPI	GGNCC	2 cut(s)	330, 368
PstI	CTGCAG	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	145, 148
Sau96I	GGNCC	2 cut(s)	330, 368
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	5 cut(s)	15, 97, 199, 288, 359
SfaNI	GCATC	2 cut(s)	279, 359
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	58
SspMI	CTAG	2 cut(s)	276, 315
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	199, 359
TaqI	TCGA	1 cut(s)	295
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	144, 147
VpaK11BI	GGWCC	1 cut(s)	330
XceI	RCATGY	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	2 cut(s)	276, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.