Rorug06G0459700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000995
Physical Location & Seq
Forward (+)
58642814 .. 58646425
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0459700.1

Sequence Viewer

Length: 879 bp
ATGGTTTTTTATGTGGGCACGAATGGGTTTTCTTCTCTGAATTTCTTGACTGCCAATTCTAATCCCCTTAATAGAGGTTTTATGCAAAGGAGTATCTGGATTGTTCTTTTGCCGCTCTTCCTGGTTTTGTTAACTGCTGTTAGTTGGGTGTCCTGTTGTGATTCAGCAGATATTGGGAACAGTGTGCGATCAAATTTTGGAAGTGCTTTGAATTCAGTCTATAAAAGGTCAAGCACTAAGATACGAAAGAGAAGACAACAAATCAGTTTGGGTTCGTTCTGGAACCTTTCGTTTAAGGAAACGTTGGGGACAGAAGATTGTAGAGGTAAAAATCTGTTGAAGCATAAACCAATGCCGACTTTTGCTCTGTCTCAACCGGATTTTATGTTTTTGCCTAGACCGGTTAAGGAGCTTGATGATGCAGCAGTCAAAGTTCAGAAAGTTTTGTATATCGAACTCGAAGAAACCTTGCAGATCGTGCAGTGGTGGCTGAGGAGGTATGATAATTATTTTGTTACTTGCTTGGTTCTCCAGCTGGGACTAAAGAGCTATGGTAATTACTATGCTCTCAAGCAGAGTTCTGTGACATTCTTCGATGTTGAGAAGCCGGAAACTGCCTCTTTGTGGTGGGCAAGGGCTAGGACTAGGCTGCGAAGGTTTATTGGAAAAGGTTTGTCTAAGGATGAGAAAGCACAAAAGTTAGCTCTTCAACATTGGCTTGAAGCTGATGGTTTCTTATCTACTGTTGGGACCTTGAAATGGGTAGACCATGTCATTTTCTTATCTCAGGTTGAAACTGAATTTGAACAACAATGGGAAGATGGTAAGGCGGAAGAATGGAAAAATGCGATTCACAATGGTGAACATGTTTGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

33.74

Weight (kDa)

9.17

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 765
AciI CCGC 2 cut(s) 113, 830
AclI AACGTT 1 cut(s) 302
AcsI RAATTY 4 cut(s) 40, 193, 211, 800
AfiI CCNNNNNNNGG 2 cut(s) 624, 759
AflIII ACRYGT 1 cut(s) 865
AgeI ACCGGT 1 cut(s) 400
AgsI TTSAA 7 cut(s) 211, 340, 710, 722, 757, 794, 806
AjnI CCWGG 1 cut(s) 120
AleI CACNNNNGTG 1 cut(s) 858
AluBI AGCT 5 cut(s) 412, 535, 549, 704, 725
AluI AGCT 5 cut(s) 412, 535, 549, 704, 725
Alw26I GTCTC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 422, 649
ApoI RAATTY 4 cut(s) 40, 193, 211, 800
AsiGI ACCGGT 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 750
AsuHPI GGTGA 1 cut(s) 872
AvaII GGWCC 1 cut(s) 750
BaeGI GKGCMC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 259
BbvCI CCTCAGC 1 cut(s) 491
BbvI GCAGC 2 cut(s) 434, 636
BccI CCATC 2 cut(s) 722, 815
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 3 cut(s) 396, 639, 645
BisI GCNGC 3 cut(s) 113, 423, 650
BlsI GCNGC 3 cut(s) 114, 424, 651
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 750
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 2 cut(s) 284, 751
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 554
BsaWI WCCGGW 2 cut(s) 376, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 624, 759
Bse118I RCCGGY 1 cut(s) 400
BseBI CCWGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 688
BseLI CCNNNNNNNGG 2 cut(s) 624, 759
BseMII CTCAG 2 cut(s) 482, 800
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 2 cut(s) 434, 636
BseYI CCCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 500
BshTI ACCGGT 1 cut(s) 400
BsiSI CCGG 3 cut(s) 377, 401, 608
BslFI GGGAC 3 cut(s) 322, 552, 763
BslI CCNNNNNNNGG 2 cut(s) 624, 759
BsmAI GTCTC 1 cut(s) 375
BsmFI GGGAC 3 cut(s) 322, 552, 763
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 188, 474
BspACI CCGC 2 cut(s) 113, 830
BspCNI CTCAG 2 cut(s) 483, 799
BspLI GGNNCC 2 cut(s) 284, 751
BspQI GCTCTTC 2 cut(s) 122, 711
BsrBI CCGCTC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 400
BssMI GATC 2 cut(s) 188, 474
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 182, 745
Bst6I CTCTTC 2 cut(s) 122, 711
BstAPI GCANNNNNTGC 1 cut(s) 478
BstDEI CTNAG 4 cut(s) 237, 491, 678, 786
BstF5I GGATG 1 cut(s) 688
BstKTI GATC 2 cut(s) 191, 477
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 2 cut(s) 188, 474
BstMWI GCNNNNNNNGC 2 cut(s) 478, 487
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 434, 636
BstV2I GAAGAC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 688
BtsI GCAGTG 1 cut(s) 488
BtsIMutI CAGTG 2 cut(s) 187, 488
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 750
CspAI ACCGGT 1 cut(s) 400
CviAII CATG 2 cut(s) 770, 866
DdeI CTNAG 4 cut(s) 237, 491, 678, 786
DpnI GATC 2 cut(s) 190, 476
DpnII GATC 2 cut(s) 188, 474
Eam1104I CTCTTC 2 cut(s) 122, 711
EarI CTCTTC 2 cut(s) 122, 711
EciI GGCGGA 1 cut(s) 845
Eco47I GGWCC 1 cut(s) 750
EcoO109I RGGNCCY 1 cut(s) 750
EcoRI GAATTC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 773, 869
FaqI GGGAC 3 cut(s) 322, 552, 763
FatI CATG 2 cut(s) 769, 865
FblI GTMKAC 1 cut(s) 765
Fnu4HI GCNGC 3 cut(s) 113, 423, 650
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 3 cut(s) 113, 423, 650
FspBI CTAG 3 cut(s) 396, 639, 645
GluI GCNGC 3 cut(s) 113, 423, 650
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 515
HapII CCGG 3 cut(s) 377, 401, 608
Hin1II CATG 2 cut(s) 773, 869
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 2 cut(s) 161, 850
HpaI GTTAAC 1 cut(s) 132
HpaII CCGG 3 cut(s) 377, 401, 608
HphI GGTGA 1 cut(s) 872
Hpy166II GTNNAC 3 cut(s) 132, 766, 863
Hpy188I TCNGA 2 cut(s) 39, 438
Hpy188III TCNNGA 3 cut(s) 46, 97, 280
Hpy8I GTNNAC 3 cut(s) 132, 766, 863
HpyAV CCTTC 1 cut(s) 648
HpyCH4III ACNGT 2 cut(s) 182, 745
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 4 cut(s) 85, 422, 472, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 478, 487
HpyF3I CTNAG 4 cut(s) 237, 491, 678, 786
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 2 cut(s) 773, 869
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 2 cut(s) 188, 474
LguI GCTCTTC 2 cut(s) 122, 711
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 2 cut(s) 434, 636
LweI GCATC 1 cut(s) 409
MaeI CTAG 3 cut(s) 396, 639, 645
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 514, 583
MalI GATC 2 cut(s) 190, 476
MbiI CCGCTC 1 cut(s) 115
MboI GATC 2 cut(s) 188, 474
MboII GAAGA 9 cut(s) 24, 109, 264, 326, 473, 583, 698, 830, 845
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 7 cut(s) 40, 55, 193, 211, 505, 556, 800
MnlI CCTC 5 cut(s) 68, 317, 486, 489, 628
MseI TTAA 4 cut(s) 69, 131, 294, 405
MslI CAYNNNNRTG 1 cut(s) 858
MspA1I CMGCKG 1 cut(s) 535
MspI CCGG 3 cut(s) 377, 401, 608
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 478, 487
NdeII GATC 2 cut(s) 188, 474
NlaIII CATG 2 cut(s) 773, 869
NlaIV GGNNCC 2 cut(s) 284, 751
NmuCI GTSAC 1 cut(s) 583
NspI RCATGY 1 cut(s) 869
OliI CACNNNNGTG 1 cut(s) 858
PciI ACATGT 1 cut(s) 865
PciSI GCTCTTC 2 cut(s) 122, 711
PfeI GAWTC 2 cut(s) 161, 850
PflFI GACNNNGTC 1 cut(s) 770
PinAI ACCGGT 1 cut(s) 400
PkrI GCNGC 3 cut(s) 114, 424, 651
PpuMI RGGWCCY 1 cut(s) 750
PscI ACATGT 1 cut(s) 865
Psp1406I AACGTT 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 284, 751
PspPI GGNCC 1 cut(s) 750
PspPPI RGGWCCY 1 cut(s) 750
PsyI GACNNNGTC 1 cut(s) 770
PvuII CAGCTG 1 cut(s) 535
RseI CAYNNNNRTG 1 cut(s) 858
SapI GCTCTTC 2 cut(s) 122, 711
SaqAI TTAA 4 cut(s) 69, 131, 294, 405
SatI GCNGC 3 cut(s) 113, 423, 650
Sau3AI GATC 2 cut(s) 188, 474
Sau96I GGNCC 1 cut(s) 750
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 750
SmiMI CAYNNNNRTG 1 cut(s) 858
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 7 cut(s) 40, 55, 193, 211, 505, 556, 800
SsiI CCGC 2 cut(s) 113, 830
SspMI CTAG 3 cut(s) 396, 639, 645
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 182, 745
TaiI ACGT 1 cut(s) 305
TaqI TCGA 3 cut(s) 453, 459, 594
TasI AATT 7 cut(s) 40, 55, 193, 211, 505, 556, 800
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 2 cut(s) 161, 850
Tru1I TTAA 4 cut(s) 69, 131, 294, 405
Tru9I TTAA 4 cut(s) 69, 131, 294, 405
TscAI CASTG 2 cut(s) 187, 488
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 2 cut(s) 422, 649
Tsp45I GTSAC 1 cut(s) 583
TspRI CASTG 2 cut(s) 187, 488
Tth111I GACNNNGTC 1 cut(s) 770
VpaK11BI GGWCC 1 cut(s) 750
XapI RAATTY 4 cut(s) 40, 193, 211, 800
XceI RCATGY 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 765
XspI CTAG 3 cut(s) 396, 639, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.