Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Forward (+)

4046686 .. 4057622

Gene Structure 10937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG060700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGATGGTCATCCCACTTTGGTTTTCAAGCCTGTTTACAAGTCTTTCAAATTCAAAACCTTTGAAGATATGGAAGGACTGAAGGTAGAAAAGAATACCAGTTTGAAAGACAACAATGTATTCATGGCCAATCCTAAGAGTAAAGATCCCGAGGTGGTTCAAAGTCCACATCCAGATGAGAAATGGAAGGCTGCTATTGACCATGACTTACCAGAGTTGGTTGCTTTCCTTCAAGATAGTGGTCACGAGTTTGTTAAGGACATTTGCATCGACAGTGAAGTGCTATCTCAGAATAAATGTTTGGAAGAGAACTGTGATTTGAATCTTAATAGTGTCTCTTGCATGGTAATTAGCTCTGACGCCGAAAGCAGCAGCGAATCAACTGCTGAATCTCAGGACTCATTAGTGTCATTGAATTCAAGTGTGTCGAAACATATATCCGAGCATGTGTGCAAGGAGGATGTAAGCAAGCAAAGTGGTTTTGAGGACTTGACAATTGAAGATGGAGAGCATTTTGGGGAAACAGATGATACTTCAAGTGATCATTCAACCAAGAAGACCATATCTGAAACACTGCTTCAAATTAGACAGGATCCAACTAAGGCAGTCTTGTCAGATTCAGTGGTAGTATCCTCAACTGAGGCAATTGATGACAATAGGCGGAGCAAAAACTCTCTCAAATCTGCCTTAGAGAATGCAAGAAGTGGGGAGACATTTCCTCCAAGTGTAGAGTGTCATTCTCGGAATTCATCCGAAGATGGGATGTCTGATAATGTAACAGAATCAAGTCAATCACAACATCATCTCTGCAGAGAATCCAGTTCATCAGTTTCAGGGCATTTAGCAATATACTCAGGAGCCATACCAAGTTTTGGTAGCATCTCTTTCCGATCAAACAGCAGCACAACTAGCTCTAGGTCTTTTACTTTTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.22

Weight (kDa)

4.82

Isoelectric Point (pI)

65.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	872
AciI	CCGC	1 cut(s)	661
AclWI	GGATC	3 cut(s)	140, 587, 600
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	50, 415, 745
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	759, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	354, 912
AluI	AGCT	2 cut(s)	354, 912
Alw26I	GTCTC	2 cut(s)	340, 704
AlwI	GGATC	3 cut(s)	140, 587, 600
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	191, 369, 372, 900
ApoI	RAATTY	3 cut(s)	50, 415, 745
AvaI	CYCGRG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	4 cut(s)	178, 381, 384, 912
BccI	CCATC	2 cut(s)	497, 752
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciVI	GTATCC	1 cut(s)	640
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	340, 704
BfaI	CTAG	2 cut(s)	909, 915
BfmI	CTRYAG	1 cut(s)	808
BfuI	GTATCC	1 cut(s)	640
BisI	GCNGC	4 cut(s)	192, 370, 373, 901
BlsI	GCNGC	4 cut(s)	193, 371, 374, 902
BmeT110I	CYCGRG	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	594, 859
BmsI	GCATC	2 cut(s)	276, 888
BpiI	GAAGAC	1 cut(s)	563
BsaBI	GATNNNNATC	2 cut(s)	9, 321
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	2 cut(s)	759, 872
Bse1I	ACTGG	2 cut(s)	99, 819
Bse8I	GATNNNNATC	2 cut(s)	9, 321
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	6 cut(s)	10, 10, 169, 466, 749, 768
BseJI	GATNNNNATC	2 cut(s)	9, 321
BseLI	CCNNNNNNNGG	2 cut(s)	759, 872
BseMII	CTCAG	4 cut(s)	302, 407, 630, 867
BseNI	ACTGG	2 cut(s)	99, 819
BseXI	GCAGC	4 cut(s)	178, 381, 384, 912
BshFI	GGCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	759, 872
BsmAI	GTCTC	2 cut(s)	340, 704
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	145, 541, 592, 890
BspACI	CCGC	1 cut(s)	661
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	4 cut(s)	301, 406, 631, 866
BspLI	GGNNCC	2 cut(s)	594, 859
BspMAI	CTGCAG	1 cut(s)	812
BspPI	GGATC	3 cut(s)	140, 587, 600
BsrI	ACTGG	2 cut(s)	99, 819
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	145, 541, 592, 890
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	275, 314
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	7 cut(s)	135, 288, 393, 600, 639, 688, 853
BstF5I	GGATG	6 cut(s)	10, 10, 169, 466, 749, 768
BstKTI	GATC	4 cut(s)	148, 544, 595, 893
BstMAI	GTCTC	2 cut(s)	340, 704
BstMBI	GATC	4 cut(s)	145, 541, 592, 890
BstMWI	GCNNNNNNNGC	1 cut(s)	909
BstNSI	RCATGY	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	808
BstV1I	GCAGC	4 cut(s)	178, 381, 384, 912
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	2 cut(s)	145, 592
BstYI	RGATCY	2 cut(s)	145, 592
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	6 cut(s)	10, 10, 169, 466, 749, 768
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	3 cut(s)	280, 572, 627
Cac8I	GCNNGC	1 cut(s)	470
CseI	GACGC	1 cut(s)	368
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	4 cut(s)	124, 203, 343, 446
CviJI	RGCY	6 cut(s)	31, 128, 191, 354, 860, 912
CviKI_1	RGCY	6 cut(s)	31, 128, 191, 354, 860, 912
DdeI	CTNAG	7 cut(s)	135, 288, 393, 600, 639, 688, 853
DpnI	GATC	4 cut(s)	147, 543, 594, 892
DpnII	GATC	4 cut(s)	145, 541, 592, 890
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	415, 745
FaeI	CATG	4 cut(s)	127, 206, 346, 449
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	4 cut(s)	123, 202, 342, 445
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	4 cut(s)	192, 370, 373, 901
FokI	GGATG	5 cut(s)	17, 156, 473, 736, 775
Fsp4HI	GCNGC	4 cut(s)	192, 370, 373, 901
FspBI	CTAG	2 cut(s)	909, 915
GluI	GCNGC	4 cut(s)	192, 370, 373, 901
HaeIII	GGCC	1 cut(s)	128
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	127, 206, 346, 449
HinfI	GANTC	7 cut(s)	322, 377, 389, 398, 617, 782, 815
Hpy166II	GTNNAC	2 cut(s)	37, 167
Hpy188I	TCNGA	9 cut(s)	291, 358, 442, 568, 616, 744, 754, 769, 890
Hpy188III	TCNNGA	6 cut(s)	149, 173, 233, 245, 395, 855
Hpy8I	GTNNAC	2 cut(s)	37, 167
HpyAV	CCTTC	4 cut(s)	68, 76, 181, 239
HpyCH4III	ACNGT	2 cut(s)	275, 314
HpyCH4V	TGCA	5 cut(s)	267, 342, 453, 698, 810
HpyF10VI	GCNNNNNNNGC	1 cut(s)	909
HpyF3I	CTNAG	7 cut(s)	135, 288, 393, 600, 639, 688, 853
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	127, 206, 346, 449
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	145, 541, 592, 890
LmnI	GCTCC	2 cut(s)	663, 857
LpnPI	CCDG	9 cut(s)	45, 112, 186, 225, 380, 575, 819, 832, 840
Lsp1109I	GCAGC	4 cut(s)	178, 381, 384, 912
LweI	GCATC	2 cut(s)	276, 888
MaeI	CTAG	2 cut(s)	909, 915
MaeIII	GTNAC	2 cut(s)	242, 775
MalI	GATC	4 cut(s)	147, 543, 594, 892
MboI	GATC	4 cut(s)	145, 541, 592, 890
MboII	GAAGA	5 cut(s)	77, 317, 512, 568, 767
MfeI	CAATTG	2 cut(s)	495, 645
MflI	RGATCY	2 cut(s)	145, 592
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	7 cut(s)	50, 348, 415, 495, 582, 645, 745
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	6 cut(s)	145, 451, 478, 634, 643, 729
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	2 cut(s)	255, 327
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	128
MunI	CAATTG	2 cut(s)	495, 645
Mva1269I	GAATGC	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	909
NdeII	GATC	4 cut(s)	145, 541, 592, 890
NlaIII	CATG	4 cut(s)	127, 206, 346, 449
NlaIV	GGNNCC	2 cut(s)	594, 859
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	449
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	6 cut(s)	322, 377, 389, 617, 782, 815
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	4 cut(s)	193, 371, 374, 902
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	594, 859
PstI	CTGCAG	1 cut(s)	812
PsuI	RGATCY	2 cut(s)	145, 592
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	255, 327
SatI	GCNGC	4 cut(s)	192, 370, 373, 901
Sau3AI	GATC	4 cut(s)	145, 541, 592, 890
SchI	GAGTC	1 cut(s)	392
SetI	ASST	6 cut(s)	62, 87, 156, 356, 914, 920
SfaNI	GCATC	2 cut(s)	276, 888
SfcI	CTRYAG	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	7 cut(s)	50, 348, 415, 495, 582, 645, 745
SsiI	CCGC	1 cut(s)	661
SspMI	CTAG	2 cut(s)	909, 915
TaaI	ACNGT	2 cut(s)	275, 314
TaqI	TCGA	2 cut(s)	270, 428
TasI	AATT	7 cut(s)	50, 348, 415, 495, 582, 645, 745
TfiI	GAWTC	6 cut(s)	322, 377, 389, 617, 782, 815
Tru1I	TTAA	2 cut(s)	255, 327
Tru9I	TTAA	2 cut(s)	255, 327
TscAI	CASTG	3 cut(s)	280, 579, 627
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	4 cut(s)	191, 369, 372, 900
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	112, 738, 813
TspRI	CASTG	3 cut(s)	280, 579, 627
Van91I	CCANNNNNTGG	1 cut(s)	872
XapI	RAATTY	3 cut(s)	50, 415, 745
XceI	RCATGY	1 cut(s)	449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XspI	CTAG	2 cut(s)	909, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.