Rmu_sc0003610.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003610.1
OG0000995
Physical Location & Seq
Forward (+)
123486 .. 125285
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003610.1_g000030.1.cds

Sequence Viewer

Length: 1086 bp
atgatggttgtggaagattgtgatacctctgaaaactgggaatccatggatggtcatcccactttggttttcaagcctgtttacaagtctttcaaattcaaaacctttgaagatatggaaggactgaaggtagaaaagaataccagtttgaaagacaacaatgtattcatggccaatcctaagagtaaagatcccgaggtggttcaaagtccacatccagttgagaaatggaaggctgctagtgactgtgacttaccagagttggttgctttccttcaagatagtagtcacgagtttgttaaggacatttgcattgacagtgaagtgctatctcagaataaatgtttggaagagaactgtgatttgaatcttaatagtgtctcttgcatggttagctctgatgccgaaagcagcagcgaatcaactgctgaatctcaggactcattagtgtcactgaattcaagtgtgtcgaaacatttatccgagcatgtgtgcaaggaggatgtaagcaagcaaagtggttttgaggacttgacaattgaagatggagagcattttggagaaacagatgatacttcaagtgatcattcaaccaagaagaccgtatctgaaacactgcttcaaattagacaggatccaactaaggcagtcttgtcagattcagtggtagtatcctcaactgaggcaattgatgacaataggcggagcaaaaactctctcaaatctgccttagagaatgcaagaagaggggagatatttcctccaagtgtagagtgtcattctcggaattcatccgaagatgggatgtctgataatgtaacagaatcaagtcaatcacaacatcatctctgcagagaatccagttcatcagtttcagggcatttagcaatatactcaggagccataccaagttttggtagcatctctttccgatcaaacagcagcacaactagctctaggtcttttacttttccaatattatcctcagaatgggtcggcagtccagtgagaatggttgaagctgatcggacacaattacgaaggcatcgtcgttggggggtacgatttctgtgttgtagcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

361

Amino Acids

40.07

Weight (kDa)

4.94

Isoelectric Point (pI)

67.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 914
AciI CCGC 1 cut(s) 703
AclWI GGATC 3 cut(s) 185, 629, 642
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 3 cut(s) 95, 457, 787
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 1062
AfiI CCNNNNNNNGG 3 cut(s) 801, 914, 990
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 4 cut(s) 396, 954, 1022, 1080
AluI AGCT 4 cut(s) 396, 954, 1022, 1080
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 3 cut(s) 185, 629, 642
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 4 cut(s) 236, 411, 414, 942
ApoI RAATTY 3 cut(s) 95, 457, 787
ArsI GACNNNNNNTTYG 2 cut(s) 1033, 1065
AvaI CYCGRG 1 cut(s) 194
BalI TGGCCA 1 cut(s) 173
BamHI GGATCC 1 cut(s) 634
BauI CACGAG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 4 cut(s) 223, 423, 426, 954
BccI CCATC 3 cut(s) 44, 539, 794
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciVI GTATCC 1 cut(s) 682
BclI TGATCA 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 3 cut(s) 240, 951, 957
BfmI CTRYAG 1 cut(s) 850
BfuI GTATCC 1 cut(s) 682
BisI GCNGC 4 cut(s) 237, 412, 415, 943
BlsI GCNGC 4 cut(s) 238, 413, 416, 944
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 636, 901
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 3 cut(s) 391, 930, 1054
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 605
BsaBI GATNNNNATC 2 cut(s) 54, 366
BsaJI CCNNGG 2 cut(s) 45, 195
Bsc4I CCNNNNNNNGG 3 cut(s) 801, 914, 990
Bse1I ACTGG 5 cut(s) 41, 144, 218, 861, 1004
Bse8I GATNNNNATC 2 cut(s) 54, 366
BseDI CCNNGG 2 cut(s) 45, 195
BseGI GGATG 6 cut(s) 55, 55, 214, 508, 791, 810
BseJI GATNNNNATC 2 cut(s) 54, 366
BseLI CCNNNNNNNGG 3 cut(s) 801, 914, 990
BseMII CTCAG 5 cut(s) 347, 449, 672, 909, 999
BseNI ACTGG 5 cut(s) 41, 144, 218, 861, 1004
BseXI GCAGC 4 cut(s) 223, 423, 426, 954
BshFI GGCC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 801, 914, 990
BsmAI GTCTC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 194
Bsp143I GATC 5 cut(s) 190, 583, 634, 932, 1024
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 1 cut(s) 703
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 5 cut(s) 346, 448, 673, 908, 998
BspLI GGNNCC 2 cut(s) 636, 901
BspMAI CTGCAG 1 cut(s) 854
BspPI GGATC 3 cut(s) 185, 629, 642
BsrI ACTGG 5 cut(s) 41, 144, 218, 861, 1004
BssECI CCNNGG 2 cut(s) 45, 195
BssMI GATC 5 cut(s) 190, 583, 634, 932, 1024
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 290
Bst4CI ACNGT 4 cut(s) 248, 320, 359, 604
Bst6I CTCTTC 2 cut(s) 345, 739
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 8 cut(s) 180, 333, 435, 642, 681, 730, 895, 985
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 6 cut(s) 55, 55, 214, 508, 791, 810
BstKTI GATC 5 cut(s) 193, 586, 637, 935, 1027
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 5 cut(s) 190, 583, 634, 932, 1024
BstMWI GCNNNNNNNGC 2 cut(s) 393, 951
BstNSI RCATGY 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 850
BstV1I GCAGC 4 cut(s) 223, 423, 426, 954
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 2 cut(s) 190, 634
BstYI RGATCY 2 cut(s) 190, 634
BsuI GTATCC 1 cut(s) 682
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 6 cut(s) 55, 55, 214, 508, 791, 810
BtsI GCAGTG 1 cut(s) 614
BtsIMutI CAGTG 5 cut(s) 325, 452, 614, 669, 1011
Cac8I GCNNGC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 1061
CspCI CAANNNNNGTGG 2 cut(s) 499, 534
CviAII CATG 4 cut(s) 46, 169, 388, 488
CviJI RGCY 8 cut(s) 76, 173, 236, 396, 902, 954, 1022, 1080
CviKI_1 RGCY 8 cut(s) 76, 173, 236, 396, 902, 954, 1022, 1080
CviQI GTAC 1 cut(s) 1061
DdeI CTNAG 8 cut(s) 180, 333, 435, 642, 681, 730, 895, 985
DpnI GATC 5 cut(s) 192, 585, 636, 934, 1026
DpnII GATC 5 cut(s) 190, 583, 634, 932, 1024
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 345, 739
EarI CTCTTC 2 cut(s) 345, 739
EciI GGCGGA 1 cut(s) 718
Eco130I CCWWGG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 194
EcoRI GAATTC 2 cut(s) 457, 787
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 4 cut(s) 49, 172, 391, 491
FaiI YATR 7 cut(s) 47, 116, 170, 389, 489, 892, 905
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FatI CATG 4 cut(s) 45, 168, 387, 487
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 4 cut(s) 237, 412, 415, 943
FokI GGATG 6 cut(s) 42, 62, 201, 515, 778, 817
Fsp4HI GCNGC 4 cut(s) 237, 412, 415, 943
FspBI CTAG 3 cut(s) 240, 951, 957
GluI GCNGC 4 cut(s) 237, 412, 415, 943
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 4 cut(s) 49, 172, 391, 491
HinfI GANTC 8 cut(s) 41, 367, 419, 431, 440, 659, 824, 857
Hpy166II GTNNAC 2 cut(s) 82, 212
Hpy188III TCNNGA 5 cut(s) 194, 278, 290, 437, 897
Hpy8I GTNNAC 2 cut(s) 82, 212
Hpy99I CGWCG 1 cut(s) 1053
HpyAV CCTTC 5 cut(s) 113, 121, 226, 284, 1035
HpyCH4III ACNGT 4 cut(s) 248, 320, 359, 604
HpyCH4V TGCA 5 cut(s) 312, 387, 495, 740, 852
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 951
HpyF3I CTNAG 8 cut(s) 180, 333, 435, 642, 681, 730, 895, 985
Hsp92II CATG 4 cut(s) 49, 172, 391, 491
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 5 cut(s) 190, 583, 634, 932, 1024
LmnI GCTCC 2 cut(s) 705, 899
Lsp1109I GCAGC 4 cut(s) 223, 423, 426, 954
LweI GCATC 3 cut(s) 391, 930, 1054
MaeI CTAG 3 cut(s) 240, 951, 957
MaeIII GTNAC 5 cut(s) 242, 248, 287, 450, 817
MalI GATC 5 cut(s) 192, 585, 636, 934, 1026
MboI GATC 5 cut(s) 190, 583, 634, 932, 1024
MboII GAAGA 7 cut(s) 26, 122, 362, 554, 610, 756, 809
MfeI CAATTG 2 cut(s) 537, 687
MflI RGATCY 2 cut(s) 190, 634
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 7 cut(s) 95, 457, 537, 624, 687, 787, 1034
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 662
MnlI CCTC 9 cut(s) 37, 190, 493, 520, 676, 685, 740, 771, 994
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MseI TTAA 2 cut(s) 300, 372
Msp20I TGGCCA 1 cut(s) 173
MunI CAATTG 2 cut(s) 537, 687
Mva1269I GAATGC 1 cut(s) 742
MwoI GCNNNNNNNGC 2 cut(s) 393, 951
NcoI CCATGG 1 cut(s) 45
NdeII GATC 5 cut(s) 190, 583, 634, 932, 1024
NlaIII CATG 4 cut(s) 49, 172, 391, 491
NlaIV GGNNCC 2 cut(s) 636, 901
NmuCI GTSAC 4 cut(s) 242, 248, 287, 450
NspI RCATGY 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 1045
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 7 cut(s) 41, 367, 419, 431, 659, 824, 857
PflMI CCANNNNNTGG 1 cut(s) 914
PkrI GCNGC 4 cut(s) 238, 413, 416, 944
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PspN4I GGNNCC 2 cut(s) 636, 901
PstI CTGCAG 1 cut(s) 854
PsuI RGATCY 2 cut(s) 190, 634
RsaI GTAC 1 cut(s) 1062
RsaNI GTAC 1 cut(s) 1061
SaqAI TTAA 2 cut(s) 300, 372
SatI GCNGC 4 cut(s) 237, 412, 415, 943
Sau3AI GATC 5 cut(s) 190, 583, 634, 932, 1024
SchI GAGTC 1 cut(s) 434
SetI ASST 9 cut(s) 29, 107, 132, 201, 398, 956, 962, 1024, 1082
SfaNI GCATC 3 cut(s) 391, 930, 1054
SfcI CTRYAG 1 cut(s) 850
Sse9I AATT 7 cut(s) 95, 457, 537, 624, 687, 787, 1034
SsiI CCGC 1 cut(s) 703
SspI AATATT 1 cut(s) 978
SspMI CTAG 3 cut(s) 240, 951, 957
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 4 cut(s) 248, 320, 359, 604
TaqI TCGA 1 cut(s) 470
TasI AATT 7 cut(s) 95, 457, 537, 624, 687, 787, 1034
TfiI GAWTC 7 cut(s) 41, 367, 419, 431, 659, 824, 857
Tru1I TTAA 2 cut(s) 300, 372
Tru9I TTAA 2 cut(s) 300, 372
TscAI CASTG 5 cut(s) 325, 459, 621, 669, 1011
TseFI GTSAC 4 cut(s) 242, 248, 287, 450
TseI GCWGC 4 cut(s) 236, 411, 414, 942
Tsp45I GTSAC 4 cut(s) 242, 248, 287, 450
TspDTI ATGAA 3 cut(s) 157, 780, 855
TspRI CASTG 5 cut(s) 325, 459, 621, 669, 1011
Van91I CCANNNNNTGG 1 cut(s) 914
XapI RAATTY 3 cut(s) 95, 457, 787
XceI RCATGY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XspI CTAG 3 cut(s) 240, 951, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.