Prupe.1G293500_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000995
Physical Location & Seq
Forward (+)
29113168 .. 29118512
5345 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G293500.1

Sequence Viewer

Length: 1623 bp
ATGAAACTTGAGAGAGAACCAGTGTTCAGCCACTTAGCTTTAAGCCACAAGCCTGATTCTAATCCTTTTGGTCAAAATGACATTACTCTGGACTCTGCTGCATTACAGTCAGCAAAGTGGATCATGAAGGAAAGTCAGAACAGGGTTTCATGTGGTTCGAAGGACAATGAAGAAGATGCTGGTCAAGTGCCATATGTGAAAAATGATGAAGATGAGGTCAAAGATTTTGTGCCGCCATATACTCTTTCTTCTGAAAAATTAGAAGCATTAGAGAAGGAATCAGATTATTATATGGACAAAAGTGTTATGGAATGTGAACTGCCAGAACTGATAGTTTGCTACAAAGAGAGTAGTTGCAATACAATCAAGGACATCTGCATTGATGAGGGAGTGCCTTCCCAAGATAAGAACCGGTTTGAGACTGGTGTGGATGAGAAGGAATGCTGCACCTTTTTATCTCCTGATGAGGATCAGAATAAGCAACTTCTTGAAGAACAAATGGATATCGTTGTGACCCTTCCGGACGGTTTTAAATCTTCTGCACACGATGATTTAGAGAAGGGTTTTGTCATTCCTTGCGATTCCAAGGGTCTGACGCAGATAGGCGATGCTATATATTATACACAGGAGAAGACTGAAATTGAAGTTTCCAAAGAGATTTTTTTCCCTGCAAATGTGTTGCCAATGCAAGAGTTGGGTGCAGGGAACGCCCACTCCTCCAAGTCTTCTAATGAGGAAAGCACTGAAGCTGTACAAGACACTGTTCAGAGTTCAGGTGAAAAAGTAAGTGAAATAGCACAAACTGGGAGCACTGCTGTGGTTTCAGTAACTGAAGAGTCTAGTCACAGTGAGAAGAAAGCATTGGTTTCAGCAGCTGAAGAATCAAACTTCCATGTCGATGAGTTATCTAACAATAGCAAGGTGGAGAACGGAAGCACTACTTCTGGCTTGTCGGACACTTCAGTACATGTATCCACTACCAGAGATGCATGCCCTGACAATGATGTCCACAAACATTTTGAAACTCAAACGATGCCTGCAGGTGATGATGGCGATGACAACGACGACAACATGCCTGATGCAGAGATTGTTCCAAGTCAAGTTCAACCTTGTTCAGCACCTGTGGTTACTGGCAGAGAGGAGTGTCCTGAGAATGGAGTCTGTCAACCTCTTGATACTTCAAGTACGTCCAAGGTTGATGATGAAATTCCTCATTCAGTGATTGTTTCAAGCCAAGTTCAGCATTATTCAGCACCTGTGACTATTTCCAGAGAGGAACGTCCTGAAAATGGTGTCTGGCAATGCCCTGAAACATCAAACGCATTCATGGTTGGAGATGTGAATTCTGATACACAATATGCTTCATTCCATGTTCAACGTGGTTTCGGAGAATCAAGTTTCTCTGCAGCCGGTCATTTTTCGAGTCTTATGAATACATCAGGTCCTTATTCCGGCAATGTCTCCCTTCGATCAGAGAGCAGCACCACCAGCACCCGCTCATTTGCCTTCCCTGTATTACAATCTGAATGGAATAGCAGTCCAGTTAGAATGGCAAAAGCTGACCGGAGGCATTTGCGTAAACATAGGGGTTGGGGGCATAGTCTTCTTTGCTGTAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

541

Amino Acids

59.32

Weight (kDa)

4.55

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1031
AasI GACNNNNNNGTC 1 cut(s) 1004
Acc36I ACCTGC 1 cut(s) 1031
AccBSI CCGCTC 1 cut(s) 1497
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 2 cut(s) 233, 1495
AclWI GGATC 2 cut(s) 128, 477
AcsI RAATTY 2 cut(s) 1206, 1342
AcuI CTGAAG 4 cut(s) 765, 852, 897, 945
AfaI GTAC 3 cut(s) 753, 966, 1186
AfiI CCNNNNNNNGG 3 cut(s) 1154, 1289, 1451
AflIII ACRYGT 1 cut(s) 967
AgeI ACCGGT 1 cut(s) 411
AgsI TTSAA 7 cut(s) 491, 644, 1022, 1106, 1182, 1230, 1376
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AleI CACNNNNGTG 1 cut(s) 815
AloI GAACNNNNNNTCC 2 cut(s) 698, 730
AluBI AGCT 4 cut(s) 38, 749, 875, 1559
AluI AGCT 4 cut(s) 38, 749, 875, 1559
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 2 cut(s) 413, 1465
AlwI GGATC 2 cut(s) 128, 477
AlwNI CAGNNNCTG 4 cut(s) 830, 875, 1121, 1256
Aor13HI TCCGGA 1 cut(s) 520
ApeKI GCWGC 5 cut(s) 98, 444, 872, 1406, 1479
ApoI RAATTY 2 cut(s) 1206, 1342
AsiGI ACCGGT 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 1442
AsuHPI GGTGA 2 cut(s) 788, 1055
AsuII TTCGAA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 1442
BbsI GAAGAC 3 cut(s) 638, 717, 1595
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 5 cut(s) 85, 431, 884, 1418, 1491
BccI CCATC 1 cut(s) 1043
BciVI GTATCC 1 cut(s) 982
BcoDI GTCTC 2 cut(s) 413, 1465
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 3 cut(s) 1038, 1404, 1612
BfuAI ACCTGC 1 cut(s) 1031
BfuI GTATCC 1 cut(s) 982
BisI GCNGC 6 cut(s) 99, 233, 445, 873, 1407, 1480
BlsI GCNGC 6 cut(s) 100, 234, 446, 874, 1408, 1481
Bme18I GGWCC 1 cut(s) 1442
BmgT120I GGNCC 1 cut(s) 1442
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 5 cut(s) 166, 598, 976, 1023, 1069
BmuI ACTGGG 1 cut(s) 813
BpiI GAAGAC 3 cut(s) 638, 717, 1595
Bpu14I TTCGAA 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 29
BsaBI GATNNNNATC 2 cut(s) 60, 468
BsaJI CCNNGG 2 cut(s) 585, 1191
BsaWI WCCGGW 3 cut(s) 411, 520, 1563
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 3 cut(s) 1154, 1289, 1451
Bse118I RCCGGY 2 cut(s) 411, 1409
Bse1I ACTGG 5 cut(s) 20, 427, 808, 1135, 1541
Bse3DI GCAATG 2 cut(s) 1307, 1462
Bse8I GATNNNNATC 2 cut(s) 60, 468
BseAI TCCGGA 1 cut(s) 520
BseDI CCNNGG 2 cut(s) 585, 1191
BseGI GGATG 1 cut(s) 436
BseJI GATNNNNATC 2 cut(s) 60, 468
BseLI CCNNNNNNNGG 3 cut(s) 1154, 1289, 1451
BseMI GCAATG 2 cut(s) 1307, 1462
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 5 cut(s) 20, 427, 808, 1135, 1541
BseRI GAGGAG 2 cut(s) 706, 1154
BseXI GCAGC 5 cut(s) 85, 431, 884, 1418, 1491
BsgI GTGCAG 3 cut(s) 430, 525, 720
BshTI ACCGGT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 812
BsiSI CCGG 5 cut(s) 412, 521, 1410, 1452, 1564
BslI CCNNNNNNNGG 3 cut(s) 1154, 1289, 1451
BsmAI GTCTC 2 cut(s) 413, 1465
BsmI GAATGC 2 cut(s) 446, 1322
Bsp119I TTCGAA 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 812
Bsp13I TCCGGA 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 751
Bsp143I GATC 3 cut(s) 120, 469, 1469
BspACI CCGC 2 cut(s) 233, 1495
BspCNI CTCAG 1 cut(s) 1141
BspEI TCCGGA 1 cut(s) 520
BspHI TCATGA 1 cut(s) 123
BspMAI CTGCAG 2 cut(s) 1042, 1408
BspMI ACCTGC 1 cut(s) 1031
BspPI GGATC 2 cut(s) 128, 477
BspT104I TTCGAA 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 1497
BsrDI GCAATG 2 cut(s) 1307, 1462
BsrFI RCCGGY 2 cut(s) 411, 1409
BsrGI TGTACA 1 cut(s) 751
BsrI ACTGG 5 cut(s) 20, 427, 808, 1135, 1541
BssAI RCCGGY 2 cut(s) 411, 1409
BssECI CCNNGG 2 cut(s) 585, 1191
BssMI GATC 3 cut(s) 120, 469, 1469
BssT1I CCWWGG 2 cut(s) 585, 1191
Bst4CI ACNGT 4 cut(s) 108, 527, 763, 848
Bst6I CTCTTC 1 cut(s) 828
BstAUI TGTACA 1 cut(s) 751
BstBI TTCGAA 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 991, 1038
BstDEI CTNAG 2 cut(s) 34, 1149
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 3 cut(s) 123, 472, 1472
BstMAI GTCTC 2 cut(s) 413, 1465
BstMBI GATC 3 cut(s) 120, 469, 1469
BstMWI GCNNNNNNNGC 2 cut(s) 707, 1488
BstNSI RCATGY 3 cut(s) 971, 993, 1075
BstSFI CTRYAG 3 cut(s) 1038, 1404, 1612
BstV1I GCAGC 5 cut(s) 85, 431, 884, 1418, 1491
BstV2I GAAGAC 3 cut(s) 638, 717, 1595
BsuI GTATCC 1 cut(s) 982
BtgZI GCGATG 2 cut(s) 621, 1068
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 6 cut(s) 27, 741, 759, 810, 853, 1224
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 2 cut(s) 991, 1038
CaiI CAGNNNCTG 4 cut(s) 830, 875, 1121, 1256
CciI TCATGA 1 cut(s) 123
Cfr10I RCCGGY 2 cut(s) 411, 1409
Cfr13I GGNCC 1 cut(s) 1442
CseI GACGC 1 cut(s) 604
Csp6I GTAC 3 cut(s) 752, 965, 1185
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 8 cut(s) 124, 150, 893, 968, 990, 1072, 1327, 1370
CviQI GTAC 3 cut(s) 752, 965, 1185
DdeI CTNAG 2 cut(s) 34, 1149
DpnI GATC 3 cut(s) 122, 471, 1471
DpnII GATC 3 cut(s) 120, 469, 1469
DraI TTTAAA 1 cut(s) 532
DrdI GACNNNNNNGTC 1 cut(s) 1004
DseDI GACNNNNNNGTC 1 cut(s) 1004
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
Eco130I CCWWGG 2 cut(s) 585, 1191
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 1 cut(s) 1442
Eco57I CTGAAG 4 cut(s) 765, 852, 897, 945
EcoO109I RGGNCCY 1 cut(s) 1442
EcoRI GAATTC 1 cut(s) 1342
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 585, 1191
EcoT22I ATGCAT 1 cut(s) 991
ErhI CCWWGG 2 cut(s) 585, 1191
FaeI CATG 8 cut(s) 127, 153, 896, 971, 993, 1075, 1330, 1373
FalI AAGNNNNNCTT 2 cut(s) 925, 957
FatI CATG 8 cut(s) 123, 149, 892, 967, 989, 1071, 1326, 1369
FauI CCCGC 1 cut(s) 1502
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 6 cut(s) 99, 233, 445, 873, 1407, 1480
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 6 cut(s) 99, 233, 445, 873, 1407, 1480
FspBI CTAG 1 cut(s) 840
GluI GCNGC 6 cut(s) 99, 233, 445, 873, 1407, 1480
HapII CCGG 5 cut(s) 412, 521, 1410, 1452, 1564
HgaI GACGC 1 cut(s) 604
Hin1II CATG 8 cut(s) 127, 153, 896, 971, 993, 1075, 1330, 1373
HincII GTYRAC 1 cut(s) 1166
HindII GTYRAC 1 cut(s) 1166
HpaII CCGG 5 cut(s) 412, 521, 1410, 1452, 1564
HphI GGTGA 2 cut(s) 788, 1055
Hpy166II GTNNAC 4 cut(s) 317, 1009, 1166, 1580
Hpy188III TCNNGA 9 cut(s) 89, 124, 461, 488, 521, 1148, 1172, 1269, 1283
Hpy8I GTNNAC 4 cut(s) 317, 1009, 1166, 1580
Hpy99I CGWCG 1 cut(s) 1067
HpyAV CCTTC 9 cut(s) 121, 154, 268, 405, 430, 527, 553, 1475, 1516
HpyCH4III ACNGT 4 cut(s) 108, 527, 763, 848
HpyCH4IV ACGT 3 cut(s) 1187, 1279, 1378
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 1488
HpyF3I CTNAG 2 cut(s) 34, 1149
HpySE526I ACGT 3 cut(s) 1187, 1279, 1378
Hsp92II CATG 8 cut(s) 127, 153, 896, 971, 993, 1075, 1330, 1373
Kpn2I TCCGGA 1 cut(s) 520
Kzo9I GATC 3 cut(s) 120, 469, 1469
LmnI GCTCC 1 cut(s) 807
Lsp1109I GCAGC 5 cut(s) 85, 431, 884, 1418, 1491
LweI GCATC 5 cut(s) 166, 598, 976, 1023, 1069
MaeI CTAG 1 cut(s) 840
MaeII ACGT 3 cut(s) 1187, 1279, 1378
MaeIII GTNAC 5 cut(s) 511, 826, 842, 1126, 1258
MalI GATC 3 cut(s) 122, 471, 1471
MbiI CCGCTC 1 cut(s) 1497
MboI GATC 3 cut(s) 120, 469, 1469
MhlI GDGCHC 1 cut(s) 812
MluCI AATT 4 cut(s) 257, 639, 1206, 1342
MlyI GAGTC 4 cut(s) 86, 845, 1167, 1432
MmeI TCCRAC 2 cut(s) 933, 1312
Mph1103I ATGCAT 1 cut(s) 991
MroI TCCGGA 1 cut(s) 520
MseI TTAA 2 cut(s) 41, 531
MslI CAYNNNNRTG 2 cut(s) 815, 897
MspA1I CMGCKG 1 cut(s) 875
MspI CCGG 5 cut(s) 412, 521, 1410, 1452, 1564
Mva1269I GAATGC 2 cut(s) 446, 1322
MwoI GCNNNNNNNGC 2 cut(s) 707, 1488
NdeI CATATG 1 cut(s) 193
NdeII GATC 3 cut(s) 120, 469, 1469
NlaIII CATG 8 cut(s) 127, 153, 896, 971, 993, 1075, 1330, 1373
NmuCI GTSAC 3 cut(s) 511, 842, 1258
NsiI ATGCAT 1 cut(s) 991
NspI RCATGY 3 cut(s) 971, 993, 1075
NspV TTCGAA 1 cut(s) 158
OliI CACNNNNGTG 1 cut(s) 815
PaeI GCATGC 1 cut(s) 993
PagI TCATGA 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 1031
PciI ACATGT 1 cut(s) 967
PctI GAATGC 2 cut(s) 446, 1322
PfeI GAWTC 6 cut(s) 56, 278, 581, 881, 1391, 1617
PinAI ACCGGT 1 cut(s) 411
PkrI GCNGC 6 cut(s) 100, 234, 446, 874, 1408, 1481
PleI GAGTC 4 cut(s) 86, 844, 1166, 1431
PpsI GAGTC 4 cut(s) 86, 844, 1166, 1431
PpuMI RGGWCCY 1 cut(s) 1442
PscI ACATGT 1 cut(s) 967
Psp5II RGGWCCY 1 cut(s) 1442
PspPI GGNCC 1 cut(s) 1442
PspPPI RGGWCCY 1 cut(s) 1442
PstI CTGCAG 2 cut(s) 1042, 1408
PstNI CAGNNNCTG 4 cut(s) 830, 875, 1121, 1256
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 3 cut(s) 753, 966, 1186
RsaNI GTAC 3 cut(s) 752, 965, 1185
RseI CAYNNNNRTG 2 cut(s) 815, 897
SaqAI TTAA 2 cut(s) 41, 531
SatI GCNGC 6 cut(s) 99, 233, 445, 873, 1407, 1480
Sau3AI GATC 3 cut(s) 120, 469, 1469
Sau96I GGNCC 1 cut(s) 1442
SbfI CCTGCAGG 1 cut(s) 1042
SchI GAGTC 4 cut(s) 86, 845, 1167, 1432
SdaI CCTGCAGG 1 cut(s) 1042
SduI GDGCHC 1 cut(s) 812
SfaNI GCATC 5 cut(s) 166, 598, 976, 1023, 1069
SfcI CTRYAG 3 cut(s) 1038, 1404, 1612
SfuI TTCGAA 1 cut(s) 158
SinI GGWCC 1 cut(s) 1442
SmiMI CAYNNNNRTG 2 cut(s) 815, 897
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SphI GCATGC 1 cut(s) 993
Sse8387I CCTGCAGG 1 cut(s) 1042
Sse9I AATT 4 cut(s) 257, 639, 1206, 1342
SsiI CCGC 2 cut(s) 233, 1495
SspMI CTAG 1 cut(s) 840
StyI CCWWGG 2 cut(s) 585, 1191
TaaI ACNGT 4 cut(s) 108, 527, 763, 848
TaiI ACGT 3 cut(s) 1190, 1282, 1381
TaqI TCGA 4 cut(s) 158, 897, 1421, 1468
TasI AATT 4 cut(s) 257, 639, 1206, 1342
TatI WGTACW 2 cut(s) 751, 964
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 6 cut(s) 56, 278, 581, 881, 1391, 1617
Tru1I TTAA 2 cut(s) 41, 531
Tru9I TTAA 2 cut(s) 41, 531
TscAI CASTG 6 cut(s) 27, 748, 766, 817, 853, 1224
TseFI GTSAC 3 cut(s) 511, 842, 1258
TseI GCWGC 5 cut(s) 98, 444, 872, 1406, 1479
Tsp45I GTSAC 3 cut(s) 511, 842, 1258
TspDTI ATGAA 9 cut(s) 17, 138, 140, 183, 222, 1218, 1315, 1353, 1445
TspGWI ACGGA 1 cut(s) 945
TspRI CASTG 6 cut(s) 27, 748, 766, 817, 853, 1224
VpaK11BI GGWCC 1 cut(s) 1442
XapI RAATTY 2 cut(s) 1206, 1342
XceI RCATGY 3 cut(s) 971, 993, 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 1376
XspI CTAG 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.