Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Forward (+)

22154088 .. 22154654

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGTGACAACAGAAGGACAAGCAATGCTTCTGTAAAAGGTGGCCTAGAAGATACAAGCGGAAGCGAAGAGTTTCATGCCTCAGAAATGGAAAACATGTTGAGACATGATTCGTCCCAAGATGGGTTGTCAGATGGCCTAGCAGAATCGAGTCAACGGCACCAGCATTGCAGCGGAGAATCCAGTTCCTCTGCATACGAACTTCCTTCGGGCTCGATTTCATACTCGGGAGGAATACCGGGTTTTGGCAGCATTTCTCTTCGGTCGGGCAGCATCTCTTTTCGGTCGAGCAACAGCACAACGAGCTCTCGGTCTTTCTCTTTTCCCATATTATCCTCGGAATGGAATGGCAGCCCGGCGAGAATGGGGAGCGCTGACCATCGACAATTACACCGGCACCGACACCGGCACTGGGGGATGCGATTTCTCTGCTGCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.03

Weight (kDa)

7.13

Isoelectric Point (pI)

64.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	159, 396
AciI	CCGC	2 cut(s)	60, 174
AcsI	RAATTY	1 cut(s)	437
AfeI	AGCGCT	1 cut(s)	373
AfiI	CCNNNNNNNGG	4 cut(s)	123, 245, 342, 412
AflIII	ACRYGT	1 cut(s)	96
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	226
Aor51HI	AGCGCT	1 cut(s)	373
AoxI	GGCC	2 cut(s)	43, 136
ApeKI	GCWGC	5 cut(s)	171, 249, 270, 351, 432
ApoI	RAATTY	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	240, 356
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	226
BanI	GGYRCC	2 cut(s)	159, 396
BanII	GRGCYC	2 cut(s)	215, 308
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	5 cut(s)	183, 261, 282, 363, 419
BccI	CCATC	3 cut(s)	116, 128, 387
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	1 cut(s)	411
BcnI	CCSGG	2 cut(s)	240, 356
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	47, 140
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	5 cut(s)	172, 250, 271, 352, 433
BlsI	GCNGC	5 cut(s)	173, 251, 272, 353, 434
Bme1390I	CCNGG	2 cut(s)	240, 356
BmeT110I	CYCGRG	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	161, 398
BmrFI	CCNGG	2 cut(s)	240, 356
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	2 cut(s)	282, 408
BmuI	ACTGGG	1 cut(s)	421
BpuMI	CCSGG	2 cut(s)	240, 356
BsaJI	CCNNGG	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 245, 342, 412
Bse118I	RCCGGY	2 cut(s)	393, 405
Bse1I	ACTGG	2 cut(s)	183, 416
Bse3DI	GCAATG	2 cut(s)	31, 166
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	123, 245, 342, 412
BseMI	GCAATG	2 cut(s)	31, 166
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	183, 416
BseXI	GCAGC	5 cut(s)	183, 261, 282, 363, 419
Bsh1285I	CGRYCG	2 cut(s)	266, 287
BshFI	GGCC	2 cut(s)	45, 138
BshNI	GGYRCC	2 cut(s)	159, 396
BsiEI	CGRYCG	2 cut(s)	266, 287
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	4 cut(s)	239, 356, 394, 406
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	123, 245, 342, 412
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	45, 138
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	215, 308
BspACI	CCGC	2 cut(s)	60, 174
BspANI	GGCC	2 cut(s)	45, 138
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	161, 398
BspT107I	GGYRCC	2 cut(s)	159, 396
BsrDI	GCAATG	2 cut(s)	31, 166
BsrFI	RCCGGY	2 cut(s)	393, 405
BsrI	ACTGG	2 cut(s)	183, 416
BssAI	RCCGGY	2 cut(s)	393, 405
BssECI	CCNNGG	1 cut(s)	336
Bst6I	CTCTTC	2 cut(s)	63, 264
BstDEI	CTNAG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	423
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstMAI	GTCTC	1 cut(s)	97
BstMCI	CGRYCG	2 cut(s)	266, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	238, 354
BstV1I	GCAGC	5 cut(s)	183, 261, 282, 363, 419
BsuRI	GGCC	2 cut(s)	45, 138
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	409
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	2 cut(s)	393, 405
CviAII	CATG	3 cut(s)	77, 97, 107
CviJI	RGCY	5 cut(s)	45, 138, 213, 306, 354
CviKI_1	RGCY	5 cut(s)	45, 138, 213, 306, 354
DdeI	CTNAG	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	63, 264
EarI	CTCTTC	2 cut(s)	63, 264
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	215, 308
Eco47III	AGCGCT	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	215, 308
FaeI	CATG	3 cut(s)	80, 100, 110
FaiI	YATR	6 cut(s)	78, 98, 108, 196, 223, 329
FalI	AAGNNNNNCTT	2 cut(s)	13, 45
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	3 cut(s)	76, 96, 106
Fnu4HI	GCNGC	5 cut(s)	172, 250, 271, 352, 433
FokI	GGATG	1 cut(s)	430
FriOI	GRGCYC	2 cut(s)	215, 308
Fsp4HI	GCNGC	5 cut(s)	172, 250, 271, 352, 433
FspBI	CTAG	2 cut(s)	47, 140
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	5 cut(s)	172, 250, 271, 352, 433
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	45, 138
HapII	CCGG	4 cut(s)	239, 356, 394, 406
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	80, 100, 110
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	4 cut(s)	110, 146, 151, 179
HpaII	CCGG	4 cut(s)	239, 356, 394, 406
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	4 cut(s)	85, 133, 340, 443
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	9, 216
HpyCH4V	TGCA	3 cut(s)	171, 194, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	80, 100, 110
HspAI	GCGC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	7 cut(s)	176, 196, 252, 369, 397, 407, 419
Lsp1109I	GCAGC	5 cut(s)	183, 261, 282, 363, 419
LweI	GCATC	2 cut(s)	282, 408
MaeI	CTAG	2 cut(s)	47, 140
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	3 cut(s)	62, 80, 251
MhlI	GDGCHC	2 cut(s)	215, 308
MluCI	AATT	2 cut(s)	386, 437
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	91, 199, 224, 346
MroXI	GAANNNNTTC	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	4 cut(s)	239, 356, 394, 406
MspR9I	CCNGG	2 cut(s)	240, 356
MwoI	GCNNNNNNNGC	1 cut(s)	303
NciI	CCSGG	2 cut(s)	240, 356
NlaIII	CATG	3 cut(s)	80, 100, 110
NlaIV	GGNNCC	2 cut(s)	161, 398
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	110, 146, 179
PkrI	GCNGC	5 cut(s)	173, 251, 272, 353, 434
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	161, 398
SacI	GAGCTC	1 cut(s)	308
SatI	GCNGC	5 cut(s)	172, 250, 271, 352, 433
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	240, 356
SduI	GDGCHC	2 cut(s)	215, 308
SetI	ASST	2 cut(s)	43, 308
SfaNI	GCATC	2 cut(s)	282, 408
Sse9I	AATT	2 cut(s)	386, 437
SsiI	CCGC	2 cut(s)	60, 174
SspMI	CTAG	2 cut(s)	47, 140
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	238, 354
TaqI	TCGA	4 cut(s)	149, 215, 287, 382
TaqII	GACCGA	3 cut(s)	252, 273, 300
TasI	AATT	2 cut(s)	386, 437
TfiI	GAWTC	3 cut(s)	110, 146, 179
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	5 cut(s)	171, 249, 270, 351, 432
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	65, 210
TspRI	CASTG	1 cut(s)	416
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	2 cut(s)	47, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.