Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Reverse (-)

7562167 .. 7565525

Gene Structure 3359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGATGGTGATCCCACTTTGGTGTTCAAGCCTGTTTTCAAGTCTTTCAAATTCAAAACCTCAGAAGCTATGGAAGGACTGAAGGTCCAAAGGAATACCAGTATGAAAGACAGCAATGAATTCATTGACAATCCTAAGAGAGAAAATCCCGAGGTGGTTCAAAGTCCACATTCAGATGAGAAATGGAAGGCTGCTATGGACTATGACTTACCAGAGTTGGTTGCTTTCCTTCAAGATAGTGGTTACCCTTTTGTTAAGGACATCTGCATTGACAGTGTTGTGCCATCTCAGAATAAATGTTTGGAAGAGAACTGTGATTTGGATTTTAATAATGTCTCTTGCATGGTTAGCTCTGATGCCGAAAGTAGTAGCAAATTAACTGTAGAATCTCAGTGCTCATCAGAGTCATCAAACTCCAGTGTGTCGAAACATATATCCGACCAACTGTGGGAGGAGGATGTAAGCAAGCAAAGTGGTTTCAAGAACTTGACAACTGAAGATGGAGAGAATTACGGAGAAAAAGATGATACTTCAAGTGATCATTCAACCAAGATGATCATATCTGAAACACTACTTCAGATTAGACAGGATCCAACTAAGGCAGTCTTGTCAGATTCAGTGGTATTATCCTCAACTGAGGCAATTTATGAAAAGAGGCGAAGCAAATATTCTCACAAAACTGCCTTAGAGAAGGCAAGAAGAGTGGAAGTATTTCCTCCAAGTGTAGAGTGTCATTCTCGGAATTCATCTAAAAATGGAACAGGAAGAAATAGTTTACGACAACACAGCAAGAATGCAAGAAGTAGGGATACATTTTCACTAAGTGATTCTTCCAAAGATGAGATGTCGGATAGCTTAACAGGAGTGAGTCAATCACAACAACATTGCGGCAGAAATACAAGAAGAAAAGAGATATTTCCACAGAGTAATTCGTCTAAAGATTGGATGTCAGTTAGCATAACAGGATCAAGTCAATCACAACAGCATTGCCGTGAGAATGCAAGGAGAGAGGTATGGCATGCAAGTGTGGAGTGTCATCCTCAGGATTCATCCGAAGATGGGATGTCAGATAGTGTAACAGAATCGAGTCAATCACAACAGCATCTCCGTGGAGAATCAGGTACCTCAGTTTCAGGGCCTTTAGCGATATACTCAGGAGCCATACCAAGTTTTGGTAGCATCTCTTTCCGATCAAACAGCAGTACAACTAGCTCTAGGTCTTTCACATTTCCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

45.81

Weight (kDa)

5.48

Isoelectric Point (pI)

76.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1121
AccB1I	GGYRCC	1 cut(s)	1121
AccB7I	CCANNNNNTGG	1 cut(s)	1172
AciI	CCGC	1 cut(s)	888
AclWI	GGATC	4 cut(s)	5, 584, 597, 973
AcsI	RAATTY	3 cut(s)	50, 119, 742
AcuI	CTGAAG	3 cut(s)	101, 516, 560
AdeI	CACNNNGTG	1 cut(s)	824
AfaI	GTAC	2 cut(s)	1123, 1204
AfiI	CCNNNNNNNGG	3 cut(s)	448, 1059, 1172
AgsI	TTSAA	9 cut(s)	28, 40, 49, 55, 161, 233, 481, 534, 546
AhdI	GACNNNNNGTC	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	4 cut(s)	284, 302, 316, 334
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	4 cut(s)	68, 351, 855, 1212
AluI	AGCT	4 cut(s)	68, 351, 855, 1212
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	4 cut(s)	5, 584, 597, 973
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	1136
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	3 cut(s)	50, 119, 742
Asp700I	GAANNNNTTC	1 cut(s)	711
Asp718I	GGTACC	1 cut(s)	1121
AspS9I	GGNCC	2 cut(s)	85, 1136
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	1041
BaeI	ACNNNNGTAYC	2 cut(s)	1113, 1146
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	1121
BarI	GAAGNNNNNNTAC	2 cut(s)	793, 825
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	3 cut(s)	292, 494, 1052
BceAI	ACGGC	1 cut(s)	975
BciVI	GTATCC	1 cut(s)	802
BclI	TGATCA	2 cut(s)	538, 555
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	2 cut(s)	1209, 1215
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	802
BisI	GCNGC	2 cut(s)	192, 889
BlsI	GCNGC	2 cut(s)	193, 890
Bme18I	GGWCC	1 cut(s)	85
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	85, 1136
BmiI	GGNNCC	3 cut(s)	591, 1123, 1159
BmsI	GCATC	3 cut(s)	346, 1111, 1188
BpmI	CTGGAG	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	150, 1108
BsaXI	ACNNNNNCTCC	2 cut(s)	1089, 1119
Bsc4I	CCNNNNNNNGG	3 cut(s)	448, 1059, 1172
Bse1I	ACTGG	2 cut(s)	99, 417
Bse21I	CCTNAGG	1 cut(s)	1041
Bse3DI	GCAATG	3 cut(s)	121, 883, 985
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	150, 1108
BseGI	GGATG	6 cut(s)	10, 463, 951, 1036, 1049, 1068
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	448, 1059, 1172
BseMI	GCAATG	3 cut(s)	121, 883, 985
BseMII	CTCAG	7 cut(s)	75, 302, 404, 627, 1055, 1140, 1167
BseNI	ACTGG	2 cut(s)	99, 417
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	1138
BshNI	GGYRCC	1 cut(s)	1121
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	448, 1059, 1172
BsmAI	GTCTC	1 cut(s)	340
BsmI	GAATGC	2 cut(s)	799, 1003
BsnI	GGCC	1 cut(s)	1138
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
BspACI	CCGC	1 cut(s)	888
BspANI	GGCC	1 cut(s)	1138
BspCNI	CTCAG	7 cut(s)	74, 301, 403, 628, 1054, 1139, 1166
BspLI	GGNNCC	3 cut(s)	591, 1123, 1159
BspPI	GGATC	4 cut(s)	5, 584, 597, 973
BspT107I	GGYRCC	1 cut(s)	1121
BsrDI	GCAATG	3 cut(s)	121, 883, 985
BsrI	ACTGG	2 cut(s)	99, 417
BssECI	CCNNGG	2 cut(s)	150, 1108
BssMI	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
Bst4CI	ACNGT	4 cut(s)	275, 314, 382, 447
Bst6I	CTCTTC	2 cut(s)	300, 694
BstC8I	GCNNGC	2 cut(s)	467, 1020
BstDSI	CCRYGG	1 cut(s)	1108
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	6 cut(s)	10, 463, 951, 1036, 1049, 1068
BstKTI	GATC	6 cut(s)	13, 541, 558, 592, 968, 1193
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNSI	RCATGY	1 cut(s)	1022
BstPI	GGTNACC	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuI	GTATCC	1 cut(s)	802
BsuRI	GGCC	1 cut(s)	1138
BtgI	CCRYGG	1 cut(s)	1108
BtsCI	GGATG	6 cut(s)	10, 463, 951, 1036, 1049, 1068
BtsIMutI	CAGTG	4 cut(s)	280, 398, 424, 624
Cac8I	GCNNGC	2 cut(s)	467, 1020
Cfr13I	GGNCC	2 cut(s)	85, 1136
Csp6I	GTAC	2 cut(s)	1122, 1203
CspCI	CAANNNNNGTGG	4 cut(s)	454, 489, 684, 719
CviAII	CATG	3 cut(s)	343, 1019, 1234
CviJI	RGCY	8 cut(s)	31, 68, 191, 351, 855, 1138, 1160, 1212
CviKI_1	RGCY	8 cut(s)	31, 68, 191, 351, 855, 1138, 1160, 1212
CviQI	GTAC	2 cut(s)	1122, 1203
DpnI	GATC	6 cut(s)	12, 540, 557, 591, 967, 1192
DpnII	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
DraIII	CACNNNGTG	1 cut(s)	824
DriI	GACNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	2 cut(s)	300, 694
Eam1105I	GACNNNNNGTC	1 cut(s)	83
EarI	CTCTTC	2 cut(s)	300, 694
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	3 cut(s)	101, 516, 560
Eco81I	CCTNAGG	1 cut(s)	1041
Eco88I	CYCGRG	1 cut(s)	149
Eco91I	GGTNACC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	1136
EcoO65I	GGTNACC	1 cut(s)	242
EcoRI	GAATTC	2 cut(s)	119, 742
FaeI	CATG	3 cut(s)	346, 1022, 1237
FalI	AAGNNNNNCTT	4 cut(s)	590, 622, 814, 846
FatI	CATG	3 cut(s)	342, 1018, 1233
FbaI	TGATCA	2 cut(s)	538, 555
Fnu4HI	GCNGC	2 cut(s)	192, 889
FokI	GGATG	6 cut(s)	17, 470, 958, 1023, 1036, 1075
Fsp4HI	GCNGC	2 cut(s)	192, 889
FspBI	CTAG	2 cut(s)	1209, 1215
GluI	GCNGC	2 cut(s)	192, 889
GsuI	CTGGAG	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	1138
Hin1II	CATG	3 cut(s)	346, 1022, 1237
HinfI	GANTC	9 cut(s)	386, 404, 614, 827, 868, 1046, 1082, 1087, 1115
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	167, 776
Hpy188III	TCNNGA	5 cut(s)	149, 233, 481, 1043, 1155
Hpy8I	GTNNAC	2 cut(s)	167, 776
HpyAV	CCTTC	5 cut(s)	68, 76, 181, 239, 685
HpyCH4III	ACNGT	4 cut(s)	275, 314, 382, 447
HpyCH4V	TGCA	5 cut(s)	267, 342, 797, 1001, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	346, 1022, 1237
KpnI	GGTACC	1 cut(s)	1125
Ksp22I	TGATCA	2 cut(s)	538, 555
Kzo9I	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
LmnI	GCTCC	1 cut(s)	1157
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	3 cut(s)	346, 1111, 1188
MaeI	CTAG	2 cut(s)	1209, 1215
MaeIII	GTNAC	2 cut(s)	242, 1075
MalI	GATC	6 cut(s)	12, 540, 557, 591, 967, 1192
MboI	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
MboII	GAAGA	7 cut(s)	317, 509, 711, 777, 822, 915, 1067
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	7 cut(s)	50, 119, 374, 508, 642, 742, 928
MlyI	GAGTC	3 cut(s)	413, 877, 1096
MmeI	TCCRAC	3 cut(s)	462, 617, 828
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	4 cut(s)	255, 327, 377, 857
MslI	CAYNNNNRTG	5 cut(s)	20, 174, 990, 1023, 1107
Mva1269I	GAATGC	2 cut(s)	799, 1003
MwoI	GCNNNNNNNGC	1 cut(s)	348
NdeII	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
NlaIII	CATG	3 cut(s)	346, 1022, 1237
NlaIV	GGNNCC	3 cut(s)	591, 1123, 1159
NspI	RCATGY	1 cut(s)	1022
OliI	CACNNNNGTG	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	1022
PctI	GAATGC	2 cut(s)	799, 1003
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	6 cut(s)	386, 614, 827, 1046, 1082, 1115
PflMI	CCANNNNNTGG	1 cut(s)	1172
PkrI	GCNGC	2 cut(s)	193, 890
PleI	GAGTC	3 cut(s)	412, 876, 1095
PpsI	GAGTC	3 cut(s)	412, 876, 1095
PspEI	GGTNACC	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	591, 1123, 1159
PspPI	GGNCC	2 cut(s)	85, 1136
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	2 cut(s)	1123, 1204
RsaNI	GTAC	2 cut(s)	1122, 1203
RseI	CAYNNNNRTG	5 cut(s)	20, 174, 990, 1023, 1107
SaqAI	TTAA	4 cut(s)	255, 327, 377, 857
SatI	GCNGC	2 cut(s)	192, 889
Sau3AI	GATC	6 cut(s)	10, 538, 555, 589, 965, 1190
Sau96I	GGNCC	2 cut(s)	85, 1136
SchI	GAGTC	3 cut(s)	413, 877, 1096
SduI	GDGCHC	1 cut(s)	398
SfaNI	GCATC	3 cut(s)	346, 1111, 1188
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	5 cut(s)	20, 174, 990, 1023, 1107
SphI	GCATGC	1 cut(s)	1022
Sse9I	AATT	7 cut(s)	50, 119, 374, 508, 642, 742, 928
SsiI	CCGC	1 cut(s)	888
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	2 cut(s)	1209, 1215
TaaI	ACNGT	4 cut(s)	275, 314, 382, 447
TaqI	TCGA	2 cut(s)	425, 1085
TasI	AATT	7 cut(s)	50, 119, 374, 508, 642, 742, 928
TatI	WGTACW	1 cut(s)	1202
TauI	GCSGC	1 cut(s)	891
TfiI	GAWTC	6 cut(s)	386, 614, 827, 1046, 1082, 1115
Tru1I	TTAA	4 cut(s)	255, 327, 377, 857
Tru9I	TTAA	4 cut(s)	255, 327, 377, 857
TscAI	CASTG	4 cut(s)	280, 398, 424, 624
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	6 cut(s)	112, 119, 132, 663, 735, 1038
TspGWI	ACGGA	2 cut(s)	528, 1097
TspRI	CASTG	4 cut(s)	280, 398, 424, 624
Van91I	CCANNNNNTGG	1 cut(s)	1172
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	3 cut(s)	50, 119, 742
XceI	RCATGY	1 cut(s)	1022
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	1209, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.