Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8101974.1

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 476

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8101974.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 475 bp

atgcagatatcgagtgacaaggaaagtgaaatagcagaaactcacagcagtgctttggtttcagcaaaggaagaatctaaggatattgagaatggagcgttcttgaagcgagatcctgttccttcagctgtagaactaaactgccatgttgataagttatctgacattagtgaagtggagaatggaagcattactgttggtttggaccgttcagcacctgtatcgattagtagatttccaaacctggatcctgtcccttccactgatggatcaaactgtcttcttgacgagttgtccaacaattttaaagcggacaaaggaggaagcagttcttgtggttttaactgttcagacattctcggggatgtctgtccccaaaatgggttcagcaaacatattgaaactcaaaatatgtctgaagatgatagtgatgacatatgtgattcaaaaactatttcaagcaaagttcagcctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.86

Weight (kDa)

4.31

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	311
AclWI	GGATC	4 cut(s)	107, 242, 255, 277
AcuI	CTGAAG	2 cut(s)	108, 438
AfiI	CCNNNNNNNGG	2 cut(s)	380, 381
AgsI	TTSAA	4 cut(s)	106, 401, 447, 459
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	243
AleI	CACNNNNGTG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	4 cut(s)	107, 242, 255, 277
AlwNI	CAGNNNCTG	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	272
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	205
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	272
Bsa29I	ATCGAT	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 381
BseBI	CCWGG	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	224
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	380, 381
BshVI	ATCGAT	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	239, 357
BslI	CCNNNNNNNGG	2 cut(s)	380, 381
BsmFI	GGGAC	2 cut(s)	239, 357
BsoBI	CYCGRG	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	112, 247, 269
BspACI	CCGC	1 cut(s)	311
BspDI	ATCGAT	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	4 cut(s)	107, 242, 255, 277
BssMI	GATC	3 cut(s)	112, 247, 269
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	4 cut(s)	196, 209, 278, 347
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	3 cut(s)	115, 250, 272
BstMBI	GATC	3 cut(s)	112, 247, 269
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	2 cut(s)	112, 247
BstYI	RGATCY	2 cut(s)	112, 247
Bsu15I	ATCGAT	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 261
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	224
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	2 cut(s)	128, 472
CviKI_1	RGCY	2 cut(s)	128, 472
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	114, 249, 271
DpnII	GATC	3 cut(s)	112, 247, 269
DraI	TTTAAA	1 cut(s)	307
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1105I	GACNNNNNGTC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	108, 438
Eco88I	CYCGRG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	9
FaeI	CATG	1 cut(s)	149
FaiI	YATR	5 cut(s)	147, 396, 413, 437, 439
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	2 cut(s)	239, 357
FatI	CATG	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	437
FokI	GGATG	1 cut(s)	377
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	2 cut(s)	74, 443
Hpy188I	TCNGA	3 cut(s)	163, 352, 418
Hpy188III	TCNNGA	2 cut(s)	103, 284
HpyAV	CCTTC	2 cut(s)	132, 267
HpyCH4III	ACNGT	4 cut(s)	196, 209, 278, 347
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	112, 247, 269
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	5 cut(s)	129, 230, 231, 257, 264
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	114, 249, 271
MboI	GATC	3 cut(s)	112, 247, 269
MboII	GAAGA	3 cut(s)	83, 272, 431
MflI	RGATCY	2 cut(s)	112, 247
MluCI	AATT	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	328
MseI	TTAA	2 cut(s)	306, 342
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	437
NdeII	GATC	3 cut(s)	112, 247, 269
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	74, 443
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	112, 247
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	306, 342
Sau3AI	GATC	3 cut(s)	112, 247, 269
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	3 cut(s)	130, 220, 246
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	4 cut(s)	196, 209, 278, 347
TaqI	TCGA	2 cut(s)	11, 224
TasI	AATT	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	74, 443
Tru1I	TTAA	2 cut(s)	306, 342
Tru9I	TTAA	2 cut(s)	306, 342
TscAI	CASTG	2 cut(s)	55, 268
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspRI	CASTG	2 cut(s)	55, 268
VpaK11BI	GGWCC	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.