Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000995

Physical Location & Seq

Genomic Coordinates Forward (+)

4236554 .. 4241119

Gene Structure 4566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAGGTCCTATCTCATTTTGCAATTGAAGGAAATCAACCTCCTCCAAAAGGATATGCAGCTTCTAGGGAATCCATGGATGGTCATCCCACTTTGGTTTTCAAGCCTGTTTACAAGTCTTTCAAATTCAAAACCTTTGAAGATATGGAAGGACTGAAGGTAGAAAAGAATACCAGTTTGAAAGACAACAATGTATTCATGGCCAATCCTAAGAGTAAAGATCCCGAGGTGGTTCAAAGTCCACATCCAGATGAGAAATGGAAGGCTGCTATTGACTGTGACTTACCAGAGTTGGTTGCTTTCCTTCAAGATAGTAGTCACGAGTTTGTTAAGGACATTTGCATTGACAGTGAAGTGCTATCTCAGAATAAATGTTTGGAAGAGAACTGTGATTTGAATCTTAATAGTGTCTCTTGCATGGTTAGCTCTGATGCCGAAAGCAGCAGCGAATCAACTGCTGAATCTCAGGACTCATTAGTGTCACTGAATTCAAGTGTGTCGAAACATTTATCCGAGCATGTGTGCAAGGAGGATGTAAGCAAGCAAAGTGGTTTTGAGGACTTGACAATTGAAGATGGAGAGCATTTTGGAGAAACAGATGATACTTCAAGTGATCATTCAACCAAGAAGACCGTATCTGAAACACTGCTTCAAATTAGACAGGATCCAACTAAGGCAGTCTTGTCAGATTCAGTGGTAGTATCCTCAACTGAGGCAATTGATGACAATAGGCGGAGCAAAAACTCTCTCAAATCTGCCTTAGAGAATGCAAGAAGAGGGGAGATATTTCCTCCAAGTGTAGAGTGTCATTCTCGGAATTCATCCGAAGATGGGCTGTCTGATAATGTAACAGAATCAAGTCAATCACAACATCATCTCTGCAGAGAATCCAGTTCATCAGTTTCAGGGCATTTAGCAATATACTCAGGAGCCATACCAAGTTTTGGTAGCATCTCTTTCCGATCAAACAGCAGCACAACTAGCTCTAGGTCTTTTACTTTTCCAATATTATCCTCAGAATGGGTCGGCAGTCCAGTGAGAATGGTTGAAGCTGATAGGACACAATTACGAAGGCATCGTCGTTGGGGGGTACGATTTCTGTGTTGTAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

41.03

Weight (kDa)

5.23

Isoelectric Point (pI)

65.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810 AT2G03810
fragaria_vesca	FvH4_4g29290 FvH4_4g29290 FvH4_4g29290 FvH4_5g13400 FvH4_5g13400
malus_domestica	MD06G1205800.v1.1 MD13G1056500.v1.1 MD14G1216700.v1.1 MD16G1055400.v1.1
prunus_persica	Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.1G293500_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1 Prupe.5G210100_v2.0.a1
pyrus_communis	pycom06g18360 pycom13g05050 pycom14g17950 pycom16g04830
rosa_chinensis	RchiOBHm_Chr4g0437341 RchiOBHm_Chr7g0183741
rosa_laevigata	RLG00000005027 RLG00000006444
rosa_multiflora	Rmu_co8101974.1_g000001 Rmu_co8329495.1_g000001 Rmu_sc0000893.1_g000016 Rmu_sc0003610.1_g000030 Rmu_sc0004759.1_g000016
rosa_roxburghii	Rroxscaffold_3G00270270 Rroxscaffold_5G00378490
rosa_rugosa	Rorug04G0299600.1 Rorug04G0299700 Rorug04G0299800 Rorug04G0299900 Rorug04G0300000 Rorug04G0300100 Rorug06G0459700 Rorug06G0459800 Rorug06G0459900
rosa_samantha	Rh4AG354900 Rh4BG364800 Rh4CG115500 Rh4CG378900 Rh4DG310700 Rh4DG358600 Rh7AG060600 Rh7BG060700 Rh7CG062300 Rh7DG060700
rosa_wichuraiana	Rw4G031110 Rw7G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	944
AciI	CCGC	1 cut(s)	733
AclWI	GGATC	3 cut(s)	215, 659, 672
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	3 cut(s)	125, 487, 817
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	1092
AfiI	CCNNNNNNNGG	4 cut(s)	50, 831, 944, 1020
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	5 cut(s)	62, 426, 984, 1052, 1110
AluI	AGCT	5 cut(s)	62, 426, 984, 1052, 1110
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	3 cut(s)	215, 659, 672
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	5 cut(s)	59, 266, 441, 444, 972
ApoI	RAATTY	3 cut(s)	125, 487, 817
ArsI	GACNNNNNNTTYG	2 cut(s)	1063, 1095
AspS9I	GGNCC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	664
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	5 cut(s)	71, 253, 453, 456, 984
BccI	CCATC	3 cut(s)	74, 569, 824
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciVI	GTATCC	1 cut(s)	712
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	3 cut(s)	66, 981, 987
BfmI	CTRYAG	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	712
BisI	GCNGC	5 cut(s)	60, 267, 442, 445, 973
BlsI	GCNGC	5 cut(s)	61, 268, 443, 446, 974
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	666, 931
BmsI	GCATC	3 cut(s)	421, 960, 1084
BpiI	GAAGAC	1 cut(s)	635
BsaBI	GATNNNNATC	2 cut(s)	84, 396
BsaJI	CCNNGG	2 cut(s)	75, 225
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 831, 944, 1020
Bse1I	ACTGG	3 cut(s)	174, 891, 1034
Bse8I	GATNNNNATC	2 cut(s)	84, 396
BseDI	CCNNGG	2 cut(s)	75, 225
BseGI	GGATG	5 cut(s)	85, 85, 244, 538, 821
BseJI	GATNNNNATC	2 cut(s)	84, 396
BseLI	CCNNNNNNNGG	4 cut(s)	50, 831, 944, 1020
BseMII	CTCAG	5 cut(s)	377, 479, 702, 939, 1029
BseNI	ACTGG	3 cut(s)	174, 891, 1034
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	5 cut(s)	71, 253, 453, 456, 984
BshFI	GGCC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	50, 831, 944, 1020
BsmAI	GTCTC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	224
Bsp143I	GATC	4 cut(s)	220, 613, 664, 962
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	733
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	5 cut(s)	376, 478, 703, 938, 1028
BspLI	GGNNCC	2 cut(s)	666, 931
BspMAI	CTGCAG	1 cut(s)	884
BspPI	GGATC	3 cut(s)	215, 659, 672
BsrI	ACTGG	3 cut(s)	174, 891, 1034
BssECI	CCNNGG	2 cut(s)	75, 225
BssMI	GATC	4 cut(s)	220, 613, 664, 962
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	320
Bst4CI	ACNGT	4 cut(s)	278, 350, 389, 634
Bst6I	CTCTTC	2 cut(s)	375, 769
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	8 cut(s)	210, 363, 465, 672, 711, 760, 925, 1015
BstDSI	CCRYGG	1 cut(s)	75
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	5 cut(s)	85, 85, 244, 538, 821
BstKTI	GATC	4 cut(s)	223, 616, 667, 965
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	4 cut(s)	220, 613, 664, 962
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 981
BstNSI	RCATGY	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	880
BstV1I	GCAGC	5 cut(s)	71, 253, 453, 456, 984
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	2 cut(s)	220, 664
BstYI	RGATCY	2 cut(s)	220, 664
BsuI	GTATCC	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	5 cut(s)	85, 85, 244, 538, 821
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	5 cut(s)	355, 482, 644, 699, 1041
Cac8I	GCNNGC	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	1091
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	4 cut(s)	76, 199, 418, 518
CviQI	GTAC	1 cut(s)	1091
DdeI	CTNAG	8 cut(s)	210, 363, 465, 672, 711, 760, 925, 1015
DpnI	GATC	4 cut(s)	222, 615, 666, 964
DpnII	GATC	4 cut(s)	220, 613, 664, 962
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	2 cut(s)	375, 769
EarI	CTCTTC	2 cut(s)	375, 769
EciI	GGCGGA	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	487, 817
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	79, 202, 421, 521
FaiI	YATR	8 cut(s)	57, 77, 146, 200, 419, 519, 922, 935
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FatI	CATG	4 cut(s)	75, 198, 417, 517
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	5 cut(s)	60, 267, 442, 445, 973
FokI	GGATG	5 cut(s)	72, 92, 231, 545, 808
Fsp4HI	GCNGC	5 cut(s)	60, 267, 442, 445, 973
FspBI	CTAG	3 cut(s)	66, 981, 987
GluI	GCNGC	5 cut(s)	60, 267, 442, 445, 973
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	79, 202, 421, 521
HinfI	GANTC	8 cut(s)	71, 397, 449, 461, 470, 689, 854, 887
Hpy166II	GTNNAC	2 cut(s)	112, 242
Hpy188III	TCNNGA	6 cut(s)	224, 248, 308, 320, 467, 927
Hpy8I	GTNNAC	2 cut(s)	112, 242
Hpy99I	CGWCG	1 cut(s)	1083
HpyAV	CCTTC	6 cut(s)	23, 143, 151, 256, 314, 1065
HpyCH4III	ACNGT	4 cut(s)	278, 350, 389, 634
HpyCH4V	TGCA	7 cut(s)	23, 59, 342, 417, 525, 770, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 981
HpyF3I	CTNAG	8 cut(s)	210, 363, 465, 672, 711, 760, 925, 1015
Hsp92II	CATG	4 cut(s)	79, 202, 421, 521
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	4 cut(s)	220, 613, 664, 962
LmnI	GCTCC	2 cut(s)	735, 929
Lsp1109I	GCAGC	5 cut(s)	71, 253, 453, 456, 984
LweI	GCATC	3 cut(s)	421, 960, 1084
MaeI	CTAG	3 cut(s)	66, 981, 987
MaeIII	GTNAC	4 cut(s)	278, 317, 480, 847
MalI	GATC	4 cut(s)	222, 615, 666, 964
MboI	GATC	4 cut(s)	220, 613, 664, 962
MboII	GAAGA	6 cut(s)	152, 392, 584, 640, 786, 839
MfeI	CAATTG	3 cut(s)	24, 567, 717
MflI	RGATCY	2 cut(s)	220, 664
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	8 cut(s)	24, 125, 487, 567, 654, 717, 817, 1064
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	692
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	2 cut(s)	330, 402
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	203
MunI	CAATTG	3 cut(s)	24, 567, 717
Mva1269I	GAATGC	1 cut(s)	772
MwoI	GCNNNNNNNGC	2 cut(s)	423, 981
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	4 cut(s)	220, 613, 664, 962
NlaIII	CATG	4 cut(s)	79, 202, 421, 521
NlaIV	GGNNCC	2 cut(s)	666, 931
NmuCI	GTSAC	3 cut(s)	278, 317, 480
NspI	RCATGY	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	1075
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	7 cut(s)	71, 397, 449, 461, 689, 854, 887
PflMI	CCANNNNNTGG	1 cut(s)	944
PkrI	GCNGC	5 cut(s)	61, 268, 443, 446, 974
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	666, 931
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	884
PsuI	RGATCY	2 cut(s)	220, 664
RsaI	GTAC	1 cut(s)	1092
RsaNI	GTAC	1 cut(s)	1091
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	330, 402
SatI	GCNGC	5 cut(s)	60, 267, 442, 445, 973
Sau3AI	GATC	4 cut(s)	220, 613, 664, 962
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	464
SfaNI	GCATC	3 cut(s)	421, 960, 1084
SfcI	CTRYAG	1 cut(s)	880
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	8 cut(s)	24, 125, 487, 567, 654, 717, 817, 1064
SsiI	CCGC	1 cut(s)	733
SspI	AATATT	1 cut(s)	1008
SspMI	CTAG	3 cut(s)	66, 981, 987
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	4 cut(s)	278, 350, 389, 634
TaqI	TCGA	1 cut(s)	500
TasI	AATT	8 cut(s)	24, 125, 487, 567, 654, 717, 817, 1064
TfiI	GAWTC	7 cut(s)	71, 397, 449, 461, 689, 854, 887
Tru1I	TTAA	2 cut(s)	330, 402
Tru9I	TTAA	2 cut(s)	330, 402
TscAI	CASTG	5 cut(s)	355, 489, 651, 699, 1041
TseFI	GTSAC	3 cut(s)	278, 317, 480
TseI	GCWGC	5 cut(s)	59, 266, 441, 444, 972
Tsp45I	GTSAC	3 cut(s)	278, 317, 480
TspDTI	ATGAA	4 cut(s)	17, 187, 810, 885
TspRI	CASTG	5 cut(s)	355, 489, 651, 699, 1041
Van91I	CCANNNNNTGG	1 cut(s)	944
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	3 cut(s)	125, 487, 817
XceI	RCATGY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XspI	CTAG	3 cut(s)	66, 981, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.